Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0978 ATGTTATCAAGTTTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATCGCTGGTCAGGTCGGGGCAGTAGTTCCGATTCGGTTGGCTGCCAAGAAGGGCTACTTTGGTACAAGGACCATGGCCACCACATCAACGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTGCTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTGGGCTTGCTTGAGACTGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCCGAGACCTCGCGATTCATATGTGGTAACTTGTTCCAGCACCTCAAAGTGTTTGCCACAGAAGAAAAAGCAATGTCAGTAAATGTAATAAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCCATTGTCACCAAGCAATGGCCTATAAACCCCCAGATTGCGTCGGTTGGTTCTTGCTGTCTGGTCGGTGTGATTTGTAATGGGAAACTCTACATTGCGAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGCTTGTTCGTTCAACTGGGGAAGTTCTTCCCATTCAACTATCATCAGAGCACAATGTAAGCATAGAATCAGTTCGCCAGGAGATGCAGTCTTTGCACCCTGATGACCCCCAGATAGTAGTGTTGAAGCATAATGTATGGCGCGTAAAGGGATTGATTCAGATTTCTCGGTCAATTGGAGACGAATATCTCAAAAAGCAAGAGTTTAACCGGGCACCTTTGTATGCTAGGTTTCGTCTCCGACAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCTGCAATCTCTGTGCACGAACTCAATCCGGACGACCAATTCCTCATATTTGCTTCTGATGGGTTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATCGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGTTGGTGAAAGCAGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCCGACTTGAAGAAGATCGACCGTGGGGTTAGGCGACATTTCCACGACGACACGACAGTGATAGTCGTGTTTCTGGGGTCGAGCAAAGGGAGCAGTGACACAGGGGGAAGGAGCCCTGTTGTGTCAGTGAAAGGGGGAGGAGTGAACCTATCTGCAAAGTCTCTAGCACACTCAGAGCTCAACACTGCCCCTCCATGA 1194 49.08 MLSSLMNFLRACWQPCADRWSGRGSSSDSVGCQEGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLGLLETGPYGTFVGIYDGHGGPETSRFICGNLFQHLKVFATEEKAMSVNVIKKAFQATEEGFLSIVTKQWPINPQIASVGSCCLVGVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIESVRQEMQSLHPDDPQIVVLKHNVWRVKGLIQISRSIGDEYLKKQEFNRAPLYARFRLRQPFSRPILSSEPAISVHELNPDDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSKGSSDTGGRSPVVSVKGGGVNLSAKSLAHSELNTAPP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11370158 11375015 + Sed0011975.1 Sed04g0978 709581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0978 397 FunFam Phosphatase 2C family protein 38 366 - -
Sed04g0978 397 Gene3D - 38 364 IPR036457 -
Sed04g0978 397 CDD PP2Cc 81 357 IPR001932 -
Sed04g0978 397 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Sed04g0978 397 SUPERFAMILY PP2C-like 78 358 IPR036457 -
Sed04g0978 397 SMART PP2C_4 41 355 IPR001932 -
Sed04g0978 397 PANTHER PROTEIN PHOSPHATASE 42 356 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g0978 397 Pfam Protein phosphatase 2C 83 326 IPR001932 -
Sed04g0978 397 ProSiteProfiles PPM-type phosphatase domain profile. 64 357 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0978 Sed-Chr4:11370158 Sed04g0982 Sed-Chr4:11371063 2.10E-231 dispersed
Sed04g0978 Sed-Chr4:11370158 Sed04g0979 Sed-Chr4:11370158 2.10E-231 tandem
Sed04g0978 Sed-Chr4:11370158 Sed04g3837 Sed-Chr4:46784349 3.90E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0978 K01102 - csv:101220137 713.761