Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0984 ATGTTATCAAGTTTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATCGCTGGTCAGGTCGGGGCAGTAGTTCCGATTCGGTTGGCTGCCAAGAAGGGCTACTTTGGTACAAGGACCATGGCCACCACATCAACGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTGCTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTGGGCTTGCTTGAGACTGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCCGAGACCTCGCGATTCATATGTGGTAACTTGTTCCAGCACCTCAAAGTGTTTGCCACAGAAGAAAAAGCAATGTCAGTAAATGTAATAAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCCATTGTCACCAAGCAATGGCCTATAAACCCCCAGATTGCGTCGGTTGGTTCTTGCTGTCTGGTCGGTGTGATTTGTAATGGGAAACTCTACATTGCGAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGCTTGTTCGTTCAACTGGGGAAGTTCTTCCCATTCAACTATCATCAGAGCACAATGTAAGCATAGAATCAGTTCGCCAGGAGATGCAGTCTTTGCACCCTGATGACCCCCAGATAGTAGTGTTGAAGCATAATGTATGGCGCGTAAAGGGATTGATTCAGATTTCTCGGTCAATTGGAGACGAATATCTCAAAAAGCAAGAGTTTAACCGGGCACCTTTGTATGCTAGGTTTCGTCTCCGACAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCTGCAATCTCTGTGCACGAACTCAATCCGGACGACCAATTCCTCATATTTGCTTCTGATGGGTTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATCGTTCACAAGCATCCTCACAGTGTAAGCTTCCTTCTTTCAAGGGTAAATCCCATTGCCAATTGTATTCAGTCAAGCTATTCTCCCAAATCACAATCCTCCTCTCTTGTTTTGTTGCCTCCATCTATCTAG 1038 47.21 MLSSLMNFLRACWQPCADRWSGRGSSSDSVGCQEGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLGLLETGPYGTFVGIYDGHGGPETSRFICGNLFQHLKVFATEEKAMSVNVIKKAFQATEEGFLSIVTKQWPINPQIASVGSCCLVGVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIESVRQEMQSLHPDDPQIVVLKHNVWRVKGLIQISRSIGDEYLKKQEFNRAPLYARFRLRQPFSRPILSSEPAISVHELNPDDQFLIFASDGLWEHLSNQDAVDIVHKHPHSVSFLLSRVNPIANCIQSSYSPKSQSSSLVLLPPSI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11371063 11375015 + Sed0011975.6 Sed04g0984 709587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0984 345 Pfam Protein phosphatase 2C 82 309 IPR001932 -
Sed04g0984 345 SMART PP2C_4 41 341 IPR001932 -
Sed04g0984 345 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Sed04g0984 345 Gene3D - 38 337 IPR036457 -
Sed04g0984 345 PANTHER PROTEIN PHOSPHATASE 42 310 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g0984 345 SUPERFAMILY PP2C-like 78 308 IPR036457 -
Sed04g0984 345 CDD PP2Cc 81 312 IPR001932 -
Sed04g0984 345 ProSiteProfiles PPM-type phosphatase domain profile. 64 345 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0980 Sed-Chr4:11370158 Sed04g0984 Sed-Chr4:11371063 1.50E-201 dispersed
Sed04g0981 Sed-Chr4:11370158 Sed04g0984 Sed-Chr4:11371063 1.50E-201 dispersed
Sed04g0982 Sed-Chr4:11371063 Sed04g0984 Sed-Chr4:11371063 1.10E-182 dispersed
Sed04g0984 Sed-Chr4:11371063 Sed10g1033 Sed-Chr10:9117671 5.90E-137 dispersed
Sed04g0983 Sed-Chr4:11371063 Sed04g0984 Sed-Chr4:11371063 1.10E-182 tandem
Sed04g0984 Sed-Chr4:11371063 Sed04g0985 Sed-Chr4:11371063 1.50E-201 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0984 K01102 - csv:101220137 576.63