Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0986 | ATGGATTTCATAGCCAACCCTTTTCGCTTTTCTTCCACCTCTTCGCCTTCGTTTGGGAATCTGTTCGACAGGGTTCGAGAAATCTTCTTCTATGCGGTTTCTGCGATTCTCGGCAACGTCTTGTCTGCCATCTTCACGTTCTTCTTTGCCCTAGTGGGGACTTTGCTTGGAGCAATGACTGGAGCTTTGATTGGCCAAGAAACGGAGAGTGGGTTTGTTAGAGGAGCTGCTGTGGGTGCAATTTCTGGAGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGTTGCCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGATTAGTTCGAGAGCGGATAGGTCCAGCCATATTTAGTGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTTGATGATATCTCGAACATCTTCGACACCAGCAGCACGAAAGGATTGCCTGGGGACTCGGTTGAGAAAATCCCCAAGATCTTAGTATCTAAGAACAACAGTGTGGATGCTTATGGAGAGAAAGTCTGTTGTTCTGTTTGCCTTCAGGATTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATATTTCATTTGCCGTGCATTGATAAATGGCTTCTTACTCACGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 708 | 44.92 | MDFIANPFRFSSTSSPSFGNLFDRVREIFFYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAIFSAVQSQMGATETSFDDISNIFDTSSTKGLPGDSVEKIPKILVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHIFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11380348 | 11382478 | - | Sed0009030.1 | Sed04g0986 | 709589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0986 | 235 | Pfam | YMGG-like Gly-zipper | 50 | 85 | IPR027367 | - | |
Sed04g0986 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 235 | IPR013083 | - | |
Sed04g0986 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
Sed04g0986 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
Sed04g0986 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
Sed04g0986 | 235 | FunFam | NEP1-interacting protein-like 1 | 150 | 235 | - | - | |
Sed04g0986 | 235 | SUPERFAMILY | RING/U-box | 178 | 235 | - | - | |
Sed04g0986 | 235 | CDD | RING-H2_NIPL1-like | 189 | 232 | - | - | |
Sed04g0986 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 21 | 234 | IPR044523 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0986 | Sed-Chr4:11380348 | Sed12g0332 | Sed-Chr12:2087502 | 3.30E-14 | dispersed | |
Sed04g0986 | Sed-Chr4:11380348 | Sed02g1537 | Sed-Chr2:51076612 | 6.60E-15 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0986 | - | - | - | 0.0 |