Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0986 ATGGATTTCATAGCCAACCCTTTTCGCTTTTCTTCCACCTCTTCGCCTTCGTTTGGGAATCTGTTCGACAGGGTTCGAGAAATCTTCTTCTATGCGGTTTCTGCGATTCTCGGCAACGTCTTGTCTGCCATCTTCACGTTCTTCTTTGCCCTAGTGGGGACTTTGCTTGGAGCAATGACTGGAGCTTTGATTGGCCAAGAAACGGAGAGTGGGTTTGTTAGAGGAGCTGCTGTGGGTGCAATTTCTGGAGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGTTGCCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGATTAGTTCGAGAGCGGATAGGTCCAGCCATATTTAGTGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTTGATGATATCTCGAACATCTTCGACACCAGCAGCACGAAAGGATTGCCTGGGGACTCGGTTGAGAAAATCCCCAAGATCTTAGTATCTAAGAACAACAGTGTGGATGCTTATGGAGAGAAAGTCTGTTGTTCTGTTTGCCTTCAGGATTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATATTTCATTTGCCGTGCATTGATAAATGGCTTCTTACTCACGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA 708 44.92 MDFIANPFRFSSTSSPSFGNLFDRVREIFFYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAIFSAVQSQMGATETSFDDISNIFDTSSTKGLPGDSVEKIPKILVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHIFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11380348 11382478 - Sed0009030.1 Sed04g0986 709589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0986 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Sed04g0986 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Sed04g0986 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Sed04g0986 235 Pfam Ring finger domain 190 232 IPR001841 -
Sed04g0986 235 SMART ring_2 190 231 IPR001841 -
Sed04g0986 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Sed04g0986 235 SUPERFAMILY RING/U-box 178 235 - -
Sed04g0986 235 CDD RING-H2_NIPL1-like 189 232 - -
Sed04g0986 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0986 Sed-Chr4:11380348 Sed12g0332 Sed-Chr12:2087502 3.30E-14 dispersed
Sed04g0986 Sed-Chr4:11380348 Sed02g1537 Sed-Chr2:51076612 6.60E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0986 - - - 0.0