Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0996 ATGCCGATCGAGGACGATGTCGAGAGCTGCGGCAGCCGAGCCACCAACTCCTCCTCCTCGAATCCCAACCCCCGCCATCACCGCCAGAAGCTCGAGGTCTACACCCAAGTGCTCCGCCGGATTCAGGACTCCAACTACCTCGAGGCTAACCTCCCTGGCTTCGATGATCAGCTTTGGCTCCACTTCAACCGCCTCCCTGCTCGATATGCATTGGATGTGAATGTCGATAGGGCAGAAGATGTACTTACGCACAAGAGACTACTTCAACTAGCTGTAGACCCTGCTAACCGACCAGCATTTGAGGTTCACTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTCAATTATTCTAACAGACAGGGGATTCATCCGCCTCCAACCTTTGGTTCTTCACCTAGTCTTGGAGCACTTGCACTTCAGGCTAGCAAGTACGATGTTGAAGATAGGGATAGTGCCCTAAATGTATCACCTTGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGCGACAAGCCTAAACTCCTTAGTCAGTTAACTTCATTACTAGCTGAAGTTGGCCTTAACATACAAGAAGCTCATGCCTTCTCCTCTGTTGATGGGTTTTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTCTGAGGAAACCGAGGAGCTTAAAAGGGCAATAGAAAAAGAAATTTTAAATTTTAAGGATCAGTATTGGTCAGATAAGCAGTCCAGTCCTGCTTTGGGTAAGCATAACAAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGCAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCTGGGTCATATGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAATACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAATCTCCAAACCTTTGCATTGTAACAGAGTTTATGTCGAGAGGAAGTATATATGACTTCCTTCATAAGCAAAGAGGTGCATTTAACATTCTATCTTTACTTAAAGTAGCCATTGATATTTCGAGAGGGATGGATTATTTACACCAAAATAATATTATCCACCGAGATCTCAAGACCGCCAATCTTCTGATGGATGAAAACATGGTTGTTAAGGTTGCTGATTTTGGAGTTGCTAGAGTTCAAGATCAATCTGGAGTGATGACAGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCGTATGACCATAAGGCAGATGTTTTCAGCTTTGGAATAGCCTTGTGGGAGCTTTTAACTGGAGAAATTCCTTACTCGTCCATGACCCCATTACAAGCAGCAGTCGGCGTGGTTCAGAAGAGACTTCGGCCTACAATACCCAAGAATACCCATCCCGTTCTTTCCGAACTGCTTGAACGATGCTGGCGACAGGATCCAACCGAACGCCCGAATTTCTCAGAAATTTTAGAAATCCTCAAGCAGTTGCTCGAGCAGGTTGAAAGCAGCGGAGAGAATCGACGCAAGAAGGATAAATGA 1698 43.82 MPIEDDVESCGSRATNSSSSNPNPRHHRQKLEVYTQVLRRIQDSNYLEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPANRPAFEVHSVQVYPSANENFINSSCLDSSMMEDAQSSFNYSNRQGIHPPPTFGSSPSLGALALQASKYDVEDRDSALNVSPCFSRPMHEITFATSDKPKLLSQLTSLLAEVGLNIQEAHAFSSVDGFSLDVFVIDGWPSEETEELKRAIEKEILNFKDQYWSDKQSSPALGKHNKNRVESFPSCVEIPTDGTDVWAIDTRQLKFENKVGSGSYGDLYRGTYCSQEVAIKILRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKSPNLCIVTEFMSRGSIYDFLHKQRGAFNILSLLKVAIDISRGMDYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQDQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRLRPTIPKNTHPVLSELLERCWRQDPTERPNFSEILEILKQLLEQVESSGENRRKKDK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11439070 11455378 + Sed0019785.1 Sed04g0996 709599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0996 565 ProSiteProfiles ACT domain profile. 184 259 IPR002912 -
Sed04g0996 565 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 PANTHER SERINE-THREONINE PROTEIN KINASE 132 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g0996 565 SUPERFAMILY ACT-like 182 246 IPR045865 -
Sed04g0996 565 CDD ACT_TyrKc 182 249 - -
Sed04g0996 565 ProSiteProfiles Protein kinase domain profile. 297 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 SUPERFAMILY Protein kinase-like (PK-like) 272 546 IPR011009 -
Sed04g0996 565 MobiDBLite consensus disorder prediction 1 28 - -
Sed04g0996 565 Gene3D Transferase(Phosphotransferase) domain 1 376 565 - -
Sed04g0996 565 FunFam serine/threonine-protein kinase HT1 376 565 - -
Sed04g0996 565 Coils Coil 234 254 - -
Sed04g0996 565 FunFam Serine/threonine-protein kinase isoform 1 287 375 - -
Sed04g0996 565 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 CDD STKc_MAP3K-like 303 546 - -
Sed04g0996 565 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Sed04g0996 565 SMART serkin_6 297 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0996 565 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524(InterPro)
Sed04g0996 565 MobiDBLite consensus disorder prediction 10 24 - -
Sed04g0996 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0996 Sed-Chr4:11439070 Sed05g2202 Sed-Chr5:34825792 2.90E-218 dispersed
Sed05g1785 Sed-Chr5:31475627 Sed04g0996 Sed-Chr4:11439070 1.80E-45 dispersed
Sed04g0996 Sed-Chr4:11439070 Sed04g3824 Sed-Chr4:46695465 9.70E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78973 PF07714 PK_Tyr_Ser-Thr 3.90E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0996 - - - 0.0