Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1017 ATGATGGAGTGGGAAAAACCCGATCACCAAAACCCTTACAATCAGGGCCTGGCCGGAACCACCACCGCCGCCGCCGCCGCCGCCGGCGCTCTGTACGTCAAAGTGATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATCGCTGTCTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAAACCCTAACCGCCAACCACGATCTCACTGGAATGAGGTTGGGCAATATCTACTGTGAGCCATTGATGACATCTTCCAGCCACAAGATTACTTCTAGACAGCGGTGGACTCCGACGCCCGTGCAACTTCAGATCTTGGAGCGTATATTCGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAAATTACCTCTGAACTGGGTCAACATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGTACAACTGCCGAATCAGAAGTGGAGACAGAAGTTGAGTCACCAAATGATAAGAAGACAAAACCTGTGGATCTCCAAACTCATCAAACCTCCGCACCTTTGGGGGAGGACATGTGCTTCCGGAGTCCTGAGATGAGTCCTGAACTGCACTTCCTGGATCCAAACACCAACAAAGCTGATGTATTGTTTCCATCAAATGGAAGTTTAAAGTCTGCAAGAAGTTTGAGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCAGCTGACAGGAAAGATCGAAACGCCCGAAAACTATGATCTTTACCAGCAAGCAGAATGCTACAACATGACGGAAGGACCCTGA 816 49.02 MMEWEKPDHQNPYNQGLAGTTTAAAAAAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTANHDLTGMRLGNIYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTTAESEVETEVESPNDKKTKPVDLQTHQTSAPLGEDMCFRSPEMSPELHFLDPNTNKADVLFPSNGSLKSARSLSQMSFYEAGNEQLTGKIETPENYDLYQQAECYNMTEGP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13491584 13496253 - Sed0018688.2 Sed04g1017 709620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1017 271 CDD homeodomain 95 157 IPR001356 GO:0003677(InterPro)
Sed04g1017 271 Pfam Homeodomain 95 155 IPR001356 GO:0003677(InterPro)
Sed04g1017 271 SUPERFAMILY Homeodomain-like 91 158 IPR009057 -
Sed04g1017 271 Gene3D - 97 163 - -
Sed04g1017 271 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Sed04g1017 271 MobiDBLite consensus disorder prediction 152 181 - -
Sed04g1017 271 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Sed04g1017 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 18 268 IPR044559 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1017 Sed-Chr4:13491584 Sed04g1019 Sed-Chr4:13491584 3.30E-111 dispersed
Sed04g1016 Sed-Chr4:13491584 Sed04g1017 Sed-Chr4:13491584 2.90E-155 tandem
Sed04g1017 Sed-Chr4:13491584 Sed04g1018 Sed-Chr4:13491584 2.90E-155 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38089 PF00046 Homeodomain 8.50E-19 CL0123 Sed TF