Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1018 | ATGATGGAGTGGGAAAAACCCGATCACCAAAACCCTTACAATCAGGGCCTGGCCGGAACCACCACCGCCGCCGCCGCCGCCGCCGGCGCTCTGTACGTCAAAGTGATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATCGCTGTCTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAAACCCTAACCGCCAACCACGATCTCACTGGAATGAGGTTGGGCAATATCTACTGTGAGCCATTGATGACATCTTCCAGCCACAAGATTACTTCTAGACAGCGGTGGACTCCGACGCCCGTGCAACTTCAGATCTTGGAGCGTATATTCGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAAATTACCTCTGAACTGGGTCAACATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGTACAACTGCCGAATCAGAAGTGGAGACAGAAGTTGAGTCACCAAATGATAAGAAGACAAAACCTGTGGATCTCCAAACTCATCAAACCTCCGCACCTTTGGGGGAGGACATGTGCTTCCGGAGTCCTGAGATGAGTCCTGAACTGCACTTCCTGGATCCAAACACCAACAAAGCTGATGTATTGTTTCCATCAAATGGAAGTTTAAAGTCTGCAAGAAGTTTGAGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCAGCTGACAGGAAAGATCGAAACGCCCGAAAACTATGATCTTTACCAGCAAGCAGAATGCTACAACATGACGGAAGGACCCTGA | 816 | 49.02 | MMEWEKPDHQNPYNQGLAGTTTAAAAAAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTANHDLTGMRLGNIYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTTAESEVETEVESPNDKKTKPVDLQTHQTSAPLGEDMCFRSPEMSPELHFLDPNTNKADVLFPSNGSLKSARSLSQMSFYEAGNEQLTGKIETPENYDLYQQAECYNMTEGP | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13491584 | 13495137 | - | Sed0018688.3 | Sed04g1018 | 709621 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1018 | 271 | CDD | homeodomain | 95 | 157 | IPR001356 | GO:0003677(InterPro) | |
Sed04g1018 | 271 | Pfam | Homeodomain | 95 | 155 | IPR001356 | GO:0003677(InterPro) | |
Sed04g1018 | 271 | SUPERFAMILY | Homeodomain-like | 91 | 158 | IPR009057 | - | |
Sed04g1018 | 271 | Gene3D | - | 97 | 163 | - | - | |
Sed04g1018 | 271 | SMART | HOX_1 | 93 | 160 | IPR001356 | GO:0003677(InterPro) | |
Sed04g1018 | 271 | MobiDBLite | consensus disorder prediction | 152 | 181 | - | - | |
Sed04g1018 | 271 | ProSiteProfiles | 'Homeobox' domain profile. | 91 | 156 | IPR001356 | GO:0003677(InterPro) | |
Sed04g1018 | 271 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 18 | 268 | IPR044559 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1016 | Sed-Chr4:13491584 | Sed04g1018 | Sed-Chr4:13491584 | 2.90E-155 | dispersed | |
Sed04g1018 | Sed-Chr4:13491584 | Sed04g1020 | Sed-Chr4:13491584 | 3.30E-111 | dispersed | |
Sed04g1017 | Sed-Chr4:13491584 | Sed04g1018 | Sed-Chr4:13491584 | 2.90E-155 | tandem | |
Sed04g1018 | Sed-Chr4:13491584 | Sed04g1019 | Sed-Chr4:13491584 | 3.30E-111 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38090 | PF00046 | Homeodomain | 8.50E-19 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1018 | - | - | - | 0.0 |