Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1018 ATGATGGAGTGGGAAAAACCCGATCACCAAAACCCTTACAATCAGGGCCTGGCCGGAACCACCACCGCCGCCGCCGCCGCCGCCGGCGCTCTGTACGTCAAAGTGATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATCGCTGTCTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAAACCCTAACCGCCAACCACGATCTCACTGGAATGAGGTTGGGCAATATCTACTGTGAGCCATTGATGACATCTTCCAGCCACAAGATTACTTCTAGACAGCGGTGGACTCCGACGCCCGTGCAACTTCAGATCTTGGAGCGTATATTCGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAAATTACCTCTGAACTGGGTCAACATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGTACAACTGCCGAATCAGAAGTGGAGACAGAAGTTGAGTCACCAAATGATAAGAAGACAAAACCTGTGGATCTCCAAACTCATCAAACCTCCGCACCTTTGGGGGAGGACATGTGCTTCCGGAGTCCTGAGATGAGTCCTGAACTGCACTTCCTGGATCCAAACACCAACAAAGCTGATGTATTGTTTCCATCAAATGGAAGTTTAAAGTCTGCAAGAAGTTTGAGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCAGCTGACAGGAAAGATCGAAACGCCCGAAAACTATGATCTTTACCAGCAAGCAGAATGCTACAACATGACGGAAGGACCCTGA 816 49.02 MMEWEKPDHQNPYNQGLAGTTTAAAAAAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTANHDLTGMRLGNIYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTTAESEVETEVESPNDKKTKPVDLQTHQTSAPLGEDMCFRSPEMSPELHFLDPNTNKADVLFPSNGSLKSARSLSQMSFYEAGNEQLTGKIETPENYDLYQQAECYNMTEGP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13491584 13495137 - Sed0018688.3 Sed04g1018 709621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1018 271 CDD homeodomain 95 157 IPR001356 GO:0003677(InterPro)
Sed04g1018 271 Pfam Homeodomain 95 155 IPR001356 GO:0003677(InterPro)
Sed04g1018 271 SUPERFAMILY Homeodomain-like 91 158 IPR009057 -
Sed04g1018 271 Gene3D - 97 163 - -
Sed04g1018 271 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Sed04g1018 271 MobiDBLite consensus disorder prediction 152 181 - -
Sed04g1018 271 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Sed04g1018 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 18 268 IPR044559 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1016 Sed-Chr4:13491584 Sed04g1018 Sed-Chr4:13491584 2.90E-155 dispersed
Sed04g1018 Sed-Chr4:13491584 Sed04g1020 Sed-Chr4:13491584 3.30E-111 dispersed
Sed04g1017 Sed-Chr4:13491584 Sed04g1018 Sed-Chr4:13491584 2.90E-155 tandem
Sed04g1018 Sed-Chr4:13491584 Sed04g1019 Sed-Chr4:13491584 3.30E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38090 PF00046 Homeodomain 8.50E-19 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1018 - - - 0.0