Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1046 ATGACTCGCGATATGAGAGCTCTGGCCGAAAACACATCGGCGCCACCGCCTGAATCGGACTTCGCCGTGATTCTGGCGGCGCTGCTGTGTGCCCTAATTTCCATTGTGGGGCTCATAGCGGTGGCTCGGTGCACGTGGCTCCGCCGTGGCGGCGGTGGGGGAGCGGCGTCGGCGAACAGGGGATTGAAAAAGAAAACCCTGCAATCGCTGCCCAAATTCACGTACAGAGCCTCGCCGGAGCCCGGCGGAGAGGGGGAATGCGCGATCTGCCTGGCGGAGTTCACGGCGGGGGAGGAGATCCGGCGGCTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTGGACACGTGGCTGGGGTCCCACTCGTCCTGCCCTTCTTGCCGCCAGATCCTGGTTTTGGGCAGGTGCCAGAGGTGCGGGCAGTTGCCGGCGGCCGTGCACGGCGGCGCTCAGGAGGAGGAGGAGGAGGAGCAGAAGAGGAGGGAAGATAACAATGCTAACAACACTGGTGTGGGATTTTTGCCTTGA 531 63.65 MTRDMRALAENTSAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGGAASANRGLKKKTLQSLPKFTYRASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVGFLP 176
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 14447240 14448104 + Sed0011239.1 Sed04g1046 709649
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1046 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 133 IPR013083 -
Sed04g1046 176 Pfam Ring finger domain 86 129 IPR001841 -
Sed04g1046 176 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 167 IPR052788 -
Sed04g1046 176 SMART ring_2 87 128 IPR001841 -
Sed04g1046 176 MobiDBLite consensus disorder prediction 150 165 - -
Sed04g1046 176 SUPERFAMILY RING/U-box 66 134 - -
Sed04g1046 176 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Sed04g1046 176 MobiDBLite consensus disorder prediction 148 176 - -
Sed04g1046 176 CDD RING-H2_EL5-like 86 129 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2406 Sed-Chr1:18042023 Sed04g1046 Sed-Chr4:14447240 9.90E-38 dispersed
Sed04g1046 Sed-Chr4:14447240 Sed10g0486 Sed-Chr10:3096311 1.30E-20 dispersed
Sed04g1046 Sed-Chr4:14447240 Sed05g0635 Sed-Chr5:4630487 2.50E-19 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1046 - - - 0.0