Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g1046 | ATGACTCGCGATATGAGAGCTCTGGCCGAAAACACATCGGCGCCACCGCCTGAATCGGACTTCGCCGTGATTCTGGCGGCGCTGCTGTGTGCCCTAATTTCCATTGTGGGGCTCATAGCGGTGGCTCGGTGCACGTGGCTCCGCCGTGGCGGCGGTGGGGGAGCGGCGTCGGCGAACAGGGGATTGAAAAAGAAAACCCTGCAATCGCTGCCCAAATTCACGTACAGAGCCTCGCCGGAGCCCGGCGGAGAGGGGGAATGCGCGATCTGCCTGGCGGAGTTCACGGCGGGGGAGGAGATCCGGCGGCTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTGGACACGTGGCTGGGGTCCCACTCGTCCTGCCCTTCTTGCCGCCAGATCCTGGTTTTGGGCAGGTGCCAGAGGTGCGGGCAGTTGCCGGCGGCCGTGCACGGCGGCGCTCAGGAGGAGGAGGAGGAGGAGCAGAAGAGGAGGGAAGATAACAATGCTAACAACACTGGTGTGGGATTTTTGCCTTGA | 531 | 63.65 | MTRDMRALAENTSAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGGAASANRGLKKKTLQSLPKFTYRASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVGFLP | 176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 14447240 | 14448104 | + | Sed0011239.1 | Sed04g1046 | 709649 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g1046 | 176 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 133 | IPR013083 | - | |
| Sed04g1046 | 176 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Sed04g1046 | 176 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 15 | 167 | IPR052788 | - | |
| Sed04g1046 | 176 | SMART | ring_2 | 87 | 128 | IPR001841 | - | |
| Sed04g1046 | 176 | MobiDBLite | consensus disorder prediction | 150 | 165 | - | - | |
| Sed04g1046 | 176 | SUPERFAMILY | RING/U-box | 66 | 134 | - | - | |
| Sed04g1046 | 176 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Sed04g1046 | 176 | MobiDBLite | consensus disorder prediction | 148 | 176 | - | - | |
| Sed04g1046 | 176 | CDD | RING-H2_EL5-like | 86 | 129 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2406 | Sed-Chr1:18042023 | Sed04g1046 | Sed-Chr4:14447240 | 9.90E-38 | dispersed | |
| Sed04g1046 | Sed-Chr4:14447240 | Sed10g0486 | Sed-Chr10:3096311 | 1.30E-20 | dispersed | |
| Sed04g1046 | Sed-Chr4:14447240 | Sed05g0635 | Sed-Chr5:4630487 | 2.50E-19 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g1046 | - | - | - | 0.0 |