Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1051 ATGTCATCACAGCATTCAGATTTGGATTCTCCAGCTTTTGATTCTCACACTTCGCCCAATCCCACTCCCTTGGATCCCCCCTCCACCAGCTCTGAATCTGAACAAAATCTCTGCTCTTCATCTTCACCTCCGATCCACTTGCCTCTCTCATGGCCTCCCGACGGCGCCCTTTCTCTTCAATGGATTCACCATCTCCTCGCCGCCTTCGACTGGTCTTCCAAAAACCTACCTCCCTCCGAGTTTCCTTCCGTCCTCCCCGTCTCCGTTTTCGATACGCTGATCCTCACTGCTTCTAAGATCTTGCACAAAGAACCTAATTGCCTCAGGATCATCGATGATTCAGTTGCCGCCAGCGACTCGACCGTTGTCGTCGTCGGAGACATCCATGGCCAGCTTCATGATCTCCTCTTTCTCCTGCAGGATGCTGGTTTTCCCTCCGAAAATCGTTTTTATGTCTTCAATGGAGATTACGTCGACAGAGGGGCTTGGGGCCTTGAAACATTTTTGCTCTTATTGGCTTGGAAGGTGTTCATGCCACATCGAGTGTTTCTTCTTCGTGGAAACCATGAATCCAAGTACTGCACATCCGTTTATGGTTTCGAGAAAGAAGTGCTAAGCAAGTACGGAGACAAAGGTAAGCATGTCTATAGGAAGTGTTTGGGATGTTTTGAAGGGCTGCCTTTGGCATCGATTATTGCTGGATCTGTATTTACGGCTCATGGGGGACTTTTCCGCAGCGTATCGGTTCCTTCATCCAAAAGATCAAAAGGGAAAAAAAATCGTAGAATAAGCTTAAATACTGAAGCCAGTGGGTTATCTCTTGGTTCTTTGGATGAACTATCTAAAGCTCGAAGATCGTTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCTGGTGATGTGTTGTGGTCTGATCCCTCCATGAAGCCTGGTCTTTCCCCAAATAAAGAGAGGGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAGTTCTTGAAAAAGTTTGATCTGAAGTTAATTATCAGATCCCATGAAGGTCCTGATGCTAGAGAAAAAAGGCCTGGCCTTGGAGGAATGGATCAGGGGTACACGATAGATCATGTTGTAGATTCTGGGAAGTTGATTACTTTGTTTAGTGCTCCAGACTATCCTCAATTTCAGGCTACAGAGGAGAGGTACAAAAATAAAGGTGCATATATTATTCTAGAACCTCCGAATTTTGACGTTCCAATTATACATAGTTTTGAAGCCATTACTCCACGGCCGAAGGCCCATGCATATTACGACTTCAAAGATGTAATTGATTCTGACGAAGAATTAGATTTGGCAACAATGGCGACTGATGATTAA 1356 45.5 MSSQHSDLDSPAFDSHTSPNPTPLDPPSTSSESEQNLCSSSSPPIHLPLSWPPDGALSLQWIHHLLAAFDWSSKNLPPSEFPSVLPVSVFDTLILTASKILHKEPNCLRIIDDSVAASDSTVVVVGDIHGQLHDLLFLLQDAGFPSENRFYVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLSKYGDKGKHVYRKCLGCFEGLPLASIIAGSVFTAHGGLFRSVSVPSSKRSKGKKNRRISLNTEASGLSLGSLDELSKARRSFLDPPWEGLNLIPGDVLWSDPSMKPGLSPNKERGIGLLWGPDCTEEFLKKFDLKLIIRSHEGPDAREKRPGLGGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIILEPPNFDVPIIHSFEAITPRPKAHAYYDFKDVIDSDEELDLATMATDD 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14500781 14512991 + Sed0022104.1 Sed04g1051 709654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1051 451 ProSitePatterns Serine/threonine specific protein phosphatases signature. 185 190 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 MobiDBLite consensus disorder prediction 27 41 - -
Sed04g1051 451 FunFam Serine/threonine-protein phosphatase 69 445 - -
Sed04g1051 451 SMART pp2a_7 85 421 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 36 443 IPR051134 -
Sed04g1051 451 MobiDBLite consensus disorder prediction 1 41 - -
Sed04g1051 451 MobiDBLite consensus disorder prediction 1 19 - -
Sed04g1051 451 CDD MPP_PP7 51 431 IPR041754 -
Sed04g1051 451 Gene3D - 81 443 IPR029052 -
Sed04g1051 451 Pfam Calcineurin-like phosphoesterase 121 347 IPR004843 GO:0016787(InterPro)
Sed04g1051 451 PRINTS Serine/threonine phosphatase family signature 121 148 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 PRINTS Serine/threonine phosphatase family signature 151 178 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 PRINTS Serine/threonine phosphatase family signature 221 247 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 PRINTS Serine/threonine phosphatase family signature 375 391 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 PRINTS Serine/threonine phosphatase family signature 184 208 IPR006186 GO:0016787(InterPro)
Sed04g1051 451 SUPERFAMILY Metallo-dependent phosphatases 83 423 IPR029052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2762 Sed-Chr1:22791569 Sed04g1051 Sed-Chr4:14500781 5.40E-111 dispersed
Sed04g1051 Sed-Chr4:14500781 Sed04g3455 Sed-Chr4:44228954 5.10E-48 dispersed
Sed04g1051 Sed-Chr4:14500781 Sed04g3454 Sed-Chr4:44228954 5.10E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1051 K04460 - csv:116402510 778.859