Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1052 | ATGTGTGATGCAATGGAGACACGGGAATCTGCACAAGTTCCAGATTCTTTAAGCGAAGGAAACCAAGTTGTTTCAAGAGATGAGATCCATGATTCTCTCCCTTTGCCAGTCAAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATATACCTGAGACTCATGTAGAGGAAGTTCTACCTCCTGAGGATAATTTAGATAAATCTACAATTCCGCAGCCATCCAATCAAGATTCTGCGAATTCACTTCCATTGGATCATGACCAAGGGTTGGATAAGCCTGATGCAGACCCTGCTTCTTCGGTCAAGTCTGGGCCTGATGAGTTGTTGCCCCCAAGGGATTCGGGTCTAGATGCTGTTACTTCCAATACTCACCTGGAAAACGTTCAATCCTCCATGGATGTCAAACCTGAGGCATTTGGGATGCCTGAAACTAAAACTGGTTCGCGTGATGATGCTTTAACAGCGAGTCTTGATGAACCTGTAACTCCCCATCCAGTATCATCTTGTATTAAAACTGAAACAGAGAATGCTTTAGAATTGAAGGTCAACGAAGACGGTGTTACTACACCTCATAATGGGCATTCAAACATGAATCACTCGTTTCTTTTAGATGAAAATCTTATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTACTTTCATGAAGGAACTTGATAGCTTTTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGGGAGGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAGGCCCCCGAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTGCCTATTGTTTCCAACTCAGAACCCATGAGTATTGAAATCCAGGGATCAGGATCAGGTAGAGCTCGAAGGGATGCTGCTGCACGTGCCATGCAGGGTTGGCATTCCCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAGGCATTGGTGGTATTCATAAACGTAAGAAACCATCTTACATGGAGCATGCCGTGAAATCACCACGTACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATGTTGGACAACCAGCCGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTTTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGGGTTCAGTCTGATCCGGCAGGACGATTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACGCCCTTCAAAAAGGTGGTGAGCCTACCATCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGAGTTCCATTTGAACAGTTGGAATGA | 1539 | 44.38 | MCDAMETRESAQVPDSLSEGNQVVSRDEIHDSLPLPVKATPNSCENKIDIPETHVEEVLPPEDNLDKSTIPQPSNQDSANSLPLDHDQGLDKPDADPASSVKSGPDELLPPRDSGLDAVTSNTHLENVQSSMDVKPEAFGMPETKTGSRDDALTASLDEPVTPHPVSSCIKTETENALELKVNEDGVTTPHNGHSNMNHSFLLDENLIAEGSESGTEEEQSTFMKELDSFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIVSNSEPMSIEIQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGIHKRKKPSYMEHAVKSPRTKSSKPQLDVAVVDVGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14513541 | 14520745 | - | Sed0020142.1 | Sed04g1052 | 709655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1052 | 512 | SUPERFAMILY | ARID-like | 212 | 318 | IPR036431 | GO:0003677(InterPro) | |
Sed04g1052 | 512 | MobiDBLite | consensus disorder prediction | 67 | 83 | - | - | |
Sed04g1052 | 512 | MobiDBLite | consensus disorder prediction | 116 | 130 | - | - | |
Sed04g1052 | 512 | ProSiteProfiles | ARID domain profile. | 217 | 308 | IPR001606 | GO:0003677(InterPro) | |
Sed04g1052 | 512 | Pfam | Hsp20/alpha crystallin family | 429 | 509 | IPR002068 | - | |
Sed04g1052 | 512 | CDD | ARID | 223 | 304 | - | - | |
Sed04g1052 | 512 | SUPERFAMILY | HSP20-like chaperones | 423 | 508 | IPR008978 | - | |
Sed04g1052 | 512 | FunFam | AT-rich interactive domain-containing protein 3 | 404 | 512 | - | - | |
Sed04g1052 | 512 | SMART | ARID_2 | 214 | 304 | - | - | |
Sed04g1052 | 512 | CDD | ACD_sHsps_p23-like | 431 | 507 | - | - | |
Sed04g1052 | 512 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 412 | 512 | IPR002068 | - | |
Sed04g1052 | 512 | SMART | bright_3 | 218 | 309 | IPR001606 | GO:0003677(InterPro) | |
Sed04g1052 | 512 | FunFam | AT-rich interactive domain-containing protein 3 | 217 | 316 | - | - | |
Sed04g1052 | 512 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 78 | 510 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER) | |
Sed04g1052 | 512 | MobiDBLite | consensus disorder prediction | 49 | 63 | - | - | |
Sed04g1052 | 512 | MobiDBLite | consensus disorder prediction | 1 | 150 | - | - | |
Sed04g1052 | 512 | Pfam | ARID/BRIGHT DNA binding domain | 220 | 304 | IPR001606 | GO:0003677(InterPro) | |
Sed04g1052 | 512 | Gene3D | - | 217 | 314 | IPR036431 | GO:0003677(InterPro) | |
Sed04g1052 | 512 | Gene3D | - | 411 | 512 | IPR008978 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1052 | Sed-Chr4:14513541 | Sed04g1464 | Sed-Chr4:29392504 | 4.00E-57 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38095 | PF00011 | HSP20 | 8.40E-06 | CL0190 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1052 | - | - | - | 0.0 |