Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1052 ATGTGTGATGCAATGGAGACACGGGAATCTGCACAAGTTCCAGATTCTTTAAGCGAAGGAAACCAAGTTGTTTCAAGAGATGAGATCCATGATTCTCTCCCTTTGCCAGTCAAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATATACCTGAGACTCATGTAGAGGAAGTTCTACCTCCTGAGGATAATTTAGATAAATCTACAATTCCGCAGCCATCCAATCAAGATTCTGCGAATTCACTTCCATTGGATCATGACCAAGGGTTGGATAAGCCTGATGCAGACCCTGCTTCTTCGGTCAAGTCTGGGCCTGATGAGTTGTTGCCCCCAAGGGATTCGGGTCTAGATGCTGTTACTTCCAATACTCACCTGGAAAACGTTCAATCCTCCATGGATGTCAAACCTGAGGCATTTGGGATGCCTGAAACTAAAACTGGTTCGCGTGATGATGCTTTAACAGCGAGTCTTGATGAACCTGTAACTCCCCATCCAGTATCATCTTGTATTAAAACTGAAACAGAGAATGCTTTAGAATTGAAGGTCAACGAAGACGGTGTTACTACACCTCATAATGGGCATTCAAACATGAATCACTCGTTTCTTTTAGATGAAAATCTTATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTACTTTCATGAAGGAACTTGATAGCTTTTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGGGAGGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAGGCCCCCGAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTGCCTATTGTTTCCAACTCAGAACCCATGAGTATTGAAATCCAGGGATCAGGATCAGGTAGAGCTCGAAGGGATGCTGCTGCACGTGCCATGCAGGGTTGGCATTCCCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAGGCATTGGTGGTATTCATAAACGTAAGAAACCATCTTACATGGAGCATGCCGTGAAATCACCACGTACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATGTTGGACAACCAGCCGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTTTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGGGTTCAGTCTGATCCGGCAGGACGATTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACGCCCTTCAAAAAGGTGGTGAGCCTACCATCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGAGTTCCATTTGAACAGTTGGAATGA 1539 44.38 MCDAMETRESAQVPDSLSEGNQVVSRDEIHDSLPLPVKATPNSCENKIDIPETHVEEVLPPEDNLDKSTIPQPSNQDSANSLPLDHDQGLDKPDADPASSVKSGPDELLPPRDSGLDAVTSNTHLENVQSSMDVKPEAFGMPETKTGSRDDALTASLDEPVTPHPVSSCIKTETENALELKVNEDGVTTPHNGHSNMNHSFLLDENLIAEGSESGTEEEQSTFMKELDSFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIVSNSEPMSIEIQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGIHKRKKPSYMEHAVKSPRTKSSKPQLDVAVVDVGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 512
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 14513541 14520745 - Sed0020142.1 Sed04g1052 709655
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1052 512 SUPERFAMILY ARID-like 212 318 IPR036431 GO:0003677(InterPro)
Sed04g1052 512 MobiDBLite consensus disorder prediction 67 83 - -
Sed04g1052 512 MobiDBLite consensus disorder prediction 116 130 - -
Sed04g1052 512 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Sed04g1052 512 Pfam Hsp20/alpha crystallin family 429 509 IPR002068 -
Sed04g1052 512 CDD ARID 223 304 - -
Sed04g1052 512 SUPERFAMILY HSP20-like chaperones 423 508 IPR008978 -
Sed04g1052 512 FunFam AT-rich interactive domain-containing protein 3 404 512 - -
Sed04g1052 512 SMART ARID_2 214 304 - -
Sed04g1052 512 CDD ACD_sHsps_p23-like 431 507 - -
Sed04g1052 512 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 512 IPR002068 -
Sed04g1052 512 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Sed04g1052 512 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Sed04g1052 512 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 78 510 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Sed04g1052 512 MobiDBLite consensus disorder prediction 49 63 - -
Sed04g1052 512 MobiDBLite consensus disorder prediction 1 150 - -
Sed04g1052 512 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Sed04g1052 512 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
Sed04g1052 512 Gene3D - 411 512 IPR008978 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1052 Sed-Chr4:14513541 Sed04g1464 Sed-Chr4:29392504 4.00E-57 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38095 PF00011 HSP20 8.40E-06 CL0190 Sed TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1052 - - - 0.0