Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1052 ATGTGTGATGCAATGGAGACACGGGAATCTGCACAAGTTCCAGATTCTTTAAGCGAAGGAAACCAAGTTGTTTCAAGAGATGAGATCCATGATTCTCTCCCTTTGCCAGTCAAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATATACCTGAGACTCATGTAGAGGAAGTTCTACCTCCTGAGGATAATTTAGATAAATCTACAATTCCGCAGCCATCCAATCAAGATTCTGCGAATTCACTTCCATTGGATCATGACCAAGGGTTGGATAAGCCTGATGCAGACCCTGCTTCTTCGGTCAAGTCTGGGCCTGATGAGTTGTTGCCCCCAAGGGATTCGGGTCTAGATGCTGTTACTTCCAATACTCACCTGGAAAACGTTCAATCCTCCATGGATGTCAAACCTGAGGCATTTGGGATGCCTGAAACTAAAACTGGTTCGCGTGATGATGCTTTAACAGCGAGTCTTGATGAACCTGTAACTCCCCATCCAGTATCATCTTGTATTAAAACTGAAACAGAGAATGCTTTAGAATTGAAGGTCAACGAAGACGGTGTTACTACACCTCATAATGGGCATTCAAACATGAATCACTCGTTTCTTTTAGATGAAAATCTTATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTACTTTCATGAAGGAACTTGATAGCTTTTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGGGAGGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAGGCCCCCGAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTGCCTATTGTTTCCAACTCAGAACCCATGAGTATTGAAATCCAGGGATCAGGATCAGGTAGAGCTCGAAGGGATGCTGCTGCACGTGCCATGCAGGGTTGGCATTCCCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAGGCATTGGTGGTATTCATAAACGTAAGAAACCATCTTACATGGAGCATGCCGTGAAATCACCACGTACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATGTTGGACAACCAGCCGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTTTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGGGTTCAGTCTGATCCGGCAGGACGATTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACGCCCTTCAAAAAGGTGGTGAGCCTACCATCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGAGTTCCATTTGAACAGTTGGAATGA 1539 44.38 MCDAMETRESAQVPDSLSEGNQVVSRDEIHDSLPLPVKATPNSCENKIDIPETHVEEVLPPEDNLDKSTIPQPSNQDSANSLPLDHDQGLDKPDADPASSVKSGPDELLPPRDSGLDAVTSNTHLENVQSSMDVKPEAFGMPETKTGSRDDALTASLDEPVTPHPVSSCIKTETENALELKVNEDGVTTPHNGHSNMNHSFLLDENLIAEGSESGTEEEQSTFMKELDSFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIVSNSEPMSIEIQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGIHKRKKPSYMEHAVKSPRTKSSKPQLDVAVVDVGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14513541 14520745 - Sed0020142.1 Sed04g1052 709655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1052 512 SUPERFAMILY ARID-like 212 318 IPR036431 GO:0003677(InterPro)
Sed04g1052 512 MobiDBLite consensus disorder prediction 67 83 - -
Sed04g1052 512 MobiDBLite consensus disorder prediction 116 130 - -
Sed04g1052 512 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Sed04g1052 512 Pfam Hsp20/alpha crystallin family 429 509 IPR002068 -
Sed04g1052 512 CDD ARID 223 304 - -
Sed04g1052 512 SUPERFAMILY HSP20-like chaperones 423 508 IPR008978 -
Sed04g1052 512 FunFam AT-rich interactive domain-containing protein 3 404 512 - -
Sed04g1052 512 SMART ARID_2 214 304 - -
Sed04g1052 512 CDD ACD_sHsps_p23-like 431 507 - -
Sed04g1052 512 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 512 IPR002068 -
Sed04g1052 512 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Sed04g1052 512 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Sed04g1052 512 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 78 510 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Sed04g1052 512 MobiDBLite consensus disorder prediction 49 63 - -
Sed04g1052 512 MobiDBLite consensus disorder prediction 1 150 - -
Sed04g1052 512 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Sed04g1052 512 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
Sed04g1052 512 Gene3D - 411 512 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1052 Sed-Chr4:14513541 Sed04g1464 Sed-Chr4:29392504 4.00E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38095 PF00011 HSP20 8.40E-06 CL0190 Sed TR