Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g1056 | ATGACCTTTGGCATGGCTCAGAGTACTAGGACAATGGGTTCTTCCTTTAACTCTAGCAGTGCCAATGATGATGCTTTCCTTCAAAGCTTTGCTGCTGCTTCTAATGGGGATGATTACGACAGCGATGGCTCCAATTTCGCACCACCTACTCCTACAACCATGGCAATTCCGGAAGAGCTTGCTGCTGTCATACCTTTGATTGACAGATTCCAGGTTGAAGGATTTCTAAGGATAATGCATAAACAAATACATTCTTCTGGAAGACGTGGATTCTTTTCCAAAAGATCTGTAGGCCCTCAAGTTCGGGAAAAATTCACATTTGAGGATATGTTATGTTTTCAAAAGGATCCTATACCAACTTCATTACTTAAGATCAACTCTGACCTAGTAAGCCGAGCCATTAAACTTTTCCAAATAATCTTGAAGTACATGGGTGTTGACTCTTCTGATAGAGTTAATGCAACAAGCTTAGATGAACGAATTGAACTTGTTGGAAAACTATACAAGCACAGTTTGAAACGTTCAGAGCTTCGGGATGAACTTTTTATTCAAATCACAAAGCAAACTAGAAATTCTCCGGATAGGCAATATTTGATCAAAGCATGGGAGTTGATGTATCTATGTGCATCTGCCATGCCTCCTAGCAAGGATATTGGTGGATATCTTACGGAGTATGTTCATAATGTTGCACAAGGCACTAGTACTGATCCAGAGGTTCGCGTTCTTGCATTAAATACACTGAATGCTTTAAAGCGTTGCATGAAGGCTGGTCCTAGGCATATTATACCTGGCCGAGAGGAAATTGAAGCCCTTTTAACAGGGAGAAAGCTTACAACCATAGTATTTTTCTTGGATGAAACTTTTGAAGAAATCACATATGATATGACAACAACGGTGGCTGATTCTGTTGAGGAGCTTTCAGGAATCATAAAACTCTCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGATTGTCAGTGGAGGAGCTAAAGCACTTGATCTAGGAAATGAGGAGTATGTTGGGCTAGATGATAACAAATATATTGGAGACCTGTTATCAGAATTCAAGGCAGCAAAAGATCGAAGTAAAGGAGAAATTCTGCACTTCAAGCTGACATTTAAAAAGAAGCTGTTTAGGGAGTCTGACGAAGCTGTAGCAGATCCAATGTTTATACAGCTATCATATGTTCAGTTGCAGCATGACTATTTGTTGGGGAATTATCCTGTTGGAAGGGATGATGCTGCACAGCTGTCAGCATTGCAAATCTTAGTTGAAATTGGGTTTATTACCAGTCCAGAATCTTGCACTGAATGGAATTCGCTTCTGGAAAGATTCGTACCAAGACAAATTGCCATAACAAGACCAAAGAGAGAGTGGGAATTGGATATTCTCTCGCGTTTTCGTTCGATGGAGCATCTGACAAAAGATGATGCAAGACAACAATTTCTTCGGATATTGAGAACACTTCCTTACGGGAATTCAGTTTTCTTTGGCGTCCGTAAGATTGATGATCCCATTGGACTTCTACCTGGGCGAATAATTTTGGGTATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAATATTTGCATTCGGCCGAATTAAGAGATATAATGCAGTTTGGCAGCAGTAACACTGCTGTCTTTTTTAAAATGAGAGTTGCTGGTGTCCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTTTGCAGACACACATTAATGATGTCATGTTGCGTCGTTACTCTAAAGCTAGATCTGTTGCTGTTGGCTCCATGCTTGGAGATTCTTCTTGCAATTTTAAGACTCAAAGTGTGGAAGCATATGAGAAACGAGTTCATGATTTGAGTAAGGGCATTGAAGAGTCTCAGAGAAATGCTGAACAGTTTCGGAAGGAATTACATGAAAAAAATAAGCAAGAAGTTGTTATGCGAGAAGAATTGGAGACCTTAAAAGAATCCTTGAGATTTGAAAAGCAAAACTTAGTTGAGGCAACACGAAATCTTGAGAGGCTCAGATTGCAGTACGATGAAAAAGATAAGGAACACCAGGACATGCTAATGGAAAAAAGGGGAATGGAAGCAAGAATGGCCAAGTTGAGTGCCACAGTGTTGGAAACAAACGTGAAAAAAGATACGGCTGGAATTGATGAACAGCTTCTACAAAAACTTCAAGATGAGTTGAGGTTCCGAAATAATGAGTTGCAAGCCTCTGAAGAAATAAAAAAGAAACTGGTGAATGAAAAGCTATTGCTGGAACAAAGAATTTTTGGACATGAAAAGAAGACTAGCATTGAGATGGAATGTCTTCAGAAAAGCTTTGAACATGAACGTAAAGTCTTGAAGCTGAGAGTGGCAGAGCTTGAAAAGAAAATTGAAGAAGTAACTCAAAAACTAGCTATCATGGAGTCAACTCTTACAATTAGGAACTCTGATTTGGCAGCACTTCAAAATAATTTGAAGGAGCTAGAGGAGCTACGAGAGATGAAAGAGGATATTGACCGAAAAAATGAGCAAACAGCTAATATTTTGAAGATGCAAGGGATTCAGCTAGCTGAGATGGAAGCACTTTATAAGGAAGAGCAAATTTTAAGGAAACGCTATTTCAACGTGATAGAAGATATGAAAGGAAAGATTAGGGTTTATTGTCGACTTAGACCTCTTAATGAGAAAGAAATTATCGAAAAAGAAAAAAACGTGCTTACAAGTCTAGACGAGTTCACAGTTGAACATCCATGGAAAGACGATAAGCCAAAGCAACATATGTATGATCACGTATTTGATGGCACTGTCACCCAGGAAGATGTCTTTGAAGATACACGGTATCTAGTTCAGTCTGCCGTTGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGTAAGACATTTACAATATATGGATCTGACGAGCACCCTGGACTAACACCGCGTGCCATTGGAGAACTTTTTCGGATTTTGAAGCAAGATAGTAACAAGTTCTCATTTTCATTGAAGGCATACATGGTAGAATTATATCAAGATACATTGGTTGATCTTCTTTTGCCGAAGAATGCTAAACGACCGAAATTAGATATAAAAAAGGATACAAAGGGAATGGTATCCATTGAAAATGTCACAATAGCTTCTATCTCAACATTTGAAGAATTGAAAAAAATTATTTATCGAGGATCAGAGCAACGACATACTTCAGGGACTCAAATGAATGAAGAAAGTTCTAGATCACATTTGATACTTTCAGTTATTATTGAAAGTACCCACCTTCAGTCACAATCTGTTTCTAAAGGAAAGCTTAGTTTTGTTGATCTTGCGGGATCAGAGAGAGTGAAGAAGTCAGGTTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAGTCACTTTCAGCACTTGGGGATGTTATCAGTGCTCTGTCTTCTGGAGTCCAGCATATACCTTACAGAAATCATAAGCTAACAATGCTGATGAGTGATTCCCTCGGTGGTAATGCGAAAACGCTTATGTTTGTCAACGTCTCTCCAGCCGAATCCAACTTGGACGAGACATACAATTCACTCACATATGCGTCGAGAGTTCGATCAATTGTGAATGATCCAAGCAAAAACATATCATCTAAAGAGGTTGCCCGACTGAAAAAACTGGTTGCTTATTGGAAAGAGCAAGCGGGTAGGAGGAAAGAAGATGATGAGCTAGAAGAAATTCAAGATGGGCGACAATCTAAAGAAAAAACAGAGGTTAGATATTCCATGTAG | 3795 | 39.18 | MTFGMAQSTRTMGSSFNSSSANDDAFLQSFAAASNGDDYDSDGSNFAPPTPTTMAIPEELAAVIPLIDRFQVEGFLRIMHKQIHSSGRRGFFSKRSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRAIKLFQIILKYMGVDSSDRVNATSLDERIELVGKLYKHSLKRSELRDELFIQITKQTRNSPDRQYLIKAWELMYLCASAMPPSKDIGGYLTEYVHNVAQGTSTDPEVRVLALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGIIKLSAHSSFSLFECRKIVSGGAKALDLGNEEYVGLDDNKYIGDLLSEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFITSPESCTEWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSVAVGSMLGDSSCNFKTQSVEAYEKRVHDLSKGIEESQRNAEQFRKELHEKNKQEVVMREELETLKESLRFEKQNLVEATRNLERLRLQYDEKDKEHQDMLMEKRGMEARMAKLSATVLETNVKKDTAGIDEQLLQKLQDELRFRNNELQASEEIKKKLVNEKLLLEQRIFGHEKKTSIEMECLQKSFEHERKVLKLRVAELEKKIEEVTQKLAIMESTLTIRNSDLAALQNNLKELEELREMKEDIDRKNEQTANILKMQGIQLAEMEALYKEEQILRKRYFNVIEDMKGKIRVYCRLRPLNEKEIIEKEKNVLTSLDEFTVEHPWKDDKPKQHMYDHVFDGTVTQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDEHPGLTPRAIGELFRILKQDSNKFSFSLKAYMVELYQDTLVDLLLPKNAKRPKLDIKKDTKGMVSIENVTIASISTFEELKKIIYRGSEQRHTSGTQMNEESSRSHLILSVIIESTHLQSQSVSKGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALSSGVQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLTYASRVRSIVNDPSKNISSKEVARLKKLVAYWKEQAGRRKEDDELEEIQDGRQSKEKTEVRYSM | 1264 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 14632039 | 14654853 | - | Sed0006453.1 | Sed04g1056 | 709659 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g1056 | 1264 | Gene3D | Kinesin motor domain | 875 | 1211 | IPR036961 | - | |
| Sed04g1056 | 1264 | PRINTS | Kinesin heavy chain signature | 960 | 981 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | PRINTS | Kinesin heavy chain signature | 1159 | 1180 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | PRINTS | Kinesin heavy chain signature | 1110 | 1128 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | PRINTS | Kinesin heavy chain signature | 1079 | 1096 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | SUPERFAMILY | Second domain of FERM | 376 | 493 | IPR035963 | - | |
| Sed04g1056 | 1264 | Gene3D | - | 496 | 603 | IPR011993 | - | |
| Sed04g1056 | 1264 | Coils | Coil | 655 | 699 | - | - | |
| Sed04g1056 | 1264 | ProSiteProfiles | MyTH4 domain profile. | 113 | 272 | IPR000857 | GO:0005856(InterPro) | |
| Sed04g1056 | 1264 | SMART | kinesin_4 | 886 | 1217 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 496 | 604 | - | - | |
| Sed04g1056 | 1264 | SUPERFAMILY | Prismane protein-like | 831 | 892 | IPR011254 | GO:0003824(InterPro)|GO:0016491(InterPro) | |
| Sed04g1056 | 1264 | Pfam | MyTH4 domain | 166 | 270 | IPR000857 | GO:0005856(InterPro) | |
| Sed04g1056 | 1264 | MobiDBLite | consensus disorder prediction | 1236 | 1264 | - | - | |
| Sed04g1056 | 1264 | Coils | Coil | 731 | 765 | - | - | |
| Sed04g1056 | 1264 | FunFam | Kinesin-like calmodulin binding protein | 381 | 492 | - | - | |
| Sed04g1056 | 1264 | SMART | MyTH4_1 | 113 | 272 | IPR000857 | GO:0005856(InterPro) | |
| Sed04g1056 | 1264 | Coils | Coil | 616 | 650 | - | - | |
| Sed04g1056 | 1264 | ProSiteProfiles | Kinesin motor domain profile. | 888 | 1209 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | FunFam | Kinesin-like calmodulin-binding protein | 832 | 1211 | - | - | |
| Sed04g1056 | 1264 | PANTHER | KINESIN-LIKE PROTEIN KLP-3 | 592 | 1252 | IPR027640 | GO:0003777(InterPro)|GO:0007018(InterPro) | |
| Sed04g1056 | 1264 | Pfam | PTB domain (IRS-1 type) | 509 | 585 | IPR002404 | - | |
| Sed04g1056 | 1264 | CDD | FERM_C_KCBP | 495 | 601 | - | - | |
| Sed04g1056 | 1264 | Gene3D | - | 390 | 491 | IPR014352 | - | |
| Sed04g1056 | 1264 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 888 | 1238 | IPR027417 | - | |
| Sed04g1056 | 1264 | Pfam | Kinesin motor domain | 894 | 1209 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed04g1056 | 1264 | CDD | FERM_B-lobe | 393 | 491 | IPR019748 | - | |
| Sed04g1056 | 1264 | SUPERFAMILY | PH domain-like | 498 | 586 | - | - | |
| Sed04g1056 | 1264 | ProSitePatterns | Kinesin motor domain signature. | 1109 | 1120 | IPR019821 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro) | |
| Sed04g1056 | 1264 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 276 | 380 | - | - | |
| Sed04g1056 | 1264 | Gene3D | MyTH4 domain | 93 | 274 | IPR038185 | - | |
| Sed04g1056 | 1264 | Pfam | FERM central domain | 383 | 499 | IPR019748 | - | |
| Sed04g1056 | 1264 | ProSiteProfiles | FERM domain profile. | 277 | 592 | IPR000299 | GO:0005856(InterPro) | |
| Sed04g1056 | 1264 | Gene3D | - | 276 | 381 | - | - | |
| Sed04g1056 | 1264 | Gene3D | - | 1212 | 1259 | - | - | |
| Sed04g1056 | 1264 | SMART | B41_5 | 273 | 498 | IPR019749 | - | |
| Sed04g1056 | 1264 | CDD | KISc_C_terminal | 886 | 1211 | - | - | |
| Sed04g1056 | 1264 | Coils | Coil | 781 | 853 | - | - | |
| Sed04g1056 | 1264 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 92 | 274 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g1056 | Sed-Chr4:14632039 | Sed04g1058 | Sed-Chr4:14632039 | 0.00E+00 | dispersed | |
| Sed04g1056 | Sed-Chr4:14632039 | Sed04g1057 | Sed-Chr4:14632039 | 0.00E+00 | tandem | |
| Sed02g0208 | Sed-Chr2:34362208 | Sed04g1056 | Sed-Chr4:14632039 | 9.50E-226 | transposed | |
| Sed02g0124 | Sed-Chr2:30250343 | Sed04g1056 | Sed-Chr4:14632039 | 3.20E-129 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g1056 | K27887 | - | csv:101206704 | 2203.33 |