Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1057 ATGACCTTTGGCATGGCTCAGAGTACTAGGACAATGGGTTCTTCCTTTAACTCTAGCAGTGCCAATGATGATGCTTTCCTTCAAAGCTTTGCTGCTGCTTCTAATGGGGATGATTACGACAGCGATGGCTCCAATTTCGCACCACCTACTCCTACAACCATGGCAATTCCGGAAGAGCTTGCTGCTGTCATACCTTTGATTGACAGATTCCAGGTTGAAGGATTTCTAAGGATAATGCATAAACAAATACATTCTTCTGGAAGACGTGGATTCTTTTCCAAAAGATCTGTAGGCCCTCAAGTTCGGGAAAAATTCACATTTGAGGATATGTTATGTTTTCAAAAGGATCCTATACCAACTTCATTACTTAAGATCAACTCTGACCTAGTAAGCCGAGCCATTAAACTTTTCCAAATAATCTTGAAGTACATGGGTGTTGACTCTTCTGATAGAGTTAATGCAACAAGCTTAGATGAACGAATTGAACTTGTTGGAAAACTATACAAGCACAGTTTGAAACGTTCAGAGCTTCGGGATGAACTTTTTATTCAAATCACAAAGCAAACTAGAAATTCTCCGGATAGGCAATATTTGATCAAAGCATGGGAGTTGATGTATCTATGTGCATCTGCCATGCCTCCTAGCAAGGATATTGGTGGATATCTTACGGAGTATGTTCATAATGTTGCACAAGGCACTAGTACTGATCCAGAGGTTCGCGTTCTTGCATTAAATACACTGAATGCTTTAAAGCGTTGCATGAAGGCTGGTCCTAGGCATATTATACCTGGCCGAGAGGAAATTGAAGCCCTTTTAACAGGGAGAAAGCTTACAACCATAGTATTTTTCTTGGATGAAACTTTTGAAGAAATCACATATGATATGACAACAACGGTGGCTGATTCTGTTGAGGAGCTTTCAGGAATCATAAAACTCTCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGATTGTCAGTGGAGGAGCTAAAGCACTTGATCTAGGAAATGAGGAGTATGTTGGGCTAGATGATAACAAATATATTGGAGACCTGTTATCAGAATTCAAGGCAGCAAAAGATCGAAGTAAAGGAGAAATTCTGCACTTCAAGCTGACATTTAAAAAGAAGCTGTTTAGGGAGTCTGACGAAGCTGTAGCAGATCCAATGTTTATACAGCTATCATATGTTCAGTTGCAGCATGACTATTTGTTGGGGAATTATCCTGTTGGAAGGGATGATGCTGCACAGCTGTCAGCATTGCAAATCTTAGTTGAAATTGGGTTTATTACCAGTCCAGAATCTTGCACTGAATGGAATTCGCTTCTGGAAAGATTCGTACCAAGACAAATTGCCATAACAAGACCAAAGAGAGAGTGGGAATTGGATATTCTCTCGCGTTTTCGTTCGATGGAGCATCTGACAAAAGATGATGCAAGACAACAATTTCTTCGGATATTGAGAACACTTCCTTACGGGAATTCAGTTTTCTTTGGCGTCCGTAAGATTGATGATCCCATTGGACTTCTACCTGGGCGAATAATTTTGGGTATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAATATTTGCATTCGGCCGAATTAAGAGATATAATGCAGTTTGGCAGCAGTAACACTGCTGTCTTTTTTAAAATGAGAGTTGCTGGTGTCCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTTTGCAGACACACATTAATGATGTCATGTTGCGTCGTTACTCTAAAGCTAGATCTGTTGCTGTTGGCTCCATGCTTGGAGATTCTTCTTGCAATTTTAAGACTCAAAGTGTGGAAGCATATGAGAAACGAGTTCATGATTTGAGTAAGGGCATTGAAGAGTCTCAGAGAAATGCTGAACAGTTTCGGAAGGAATTACATGAAAAAAATAAGCAAGAAGTTGTTATGCGAGAAGAATTGGAGACCTTAAAAGAATCCTTGAGATTTGAAAAGCAAAACTTAGTTGAGGCAACACGAAATCTTGAGAGGCTCAGATTGCAGTACGATGAAAAAGATAAGGAACACCAGGACATGCTAATGGAAAAAAGGGGAATGGAAGCAAGAATGGCCAAGTTGAGTGCCACAGTGTTGGAAACAAACGTGAAAAAAGATACGGCTGGAATTGATGAACAGCTTCTACAAAAACTTCAAGATGAGTTGAGGTTCCGAAATAATGAGTTGCAAGCCTCTGAAGAAATAAAAAAGAAACTGGTGAATGAAAAGCTATTGCTGGAACAAAGAATTTTTGGACATGAAAAGAAGACTAGCATTGAGATGGAATGTCTTCAGAAAAGCTTTGAACATGAACGTAAAGTCTTGAAGCTGAGAGTGGCAGAGCTTGAAAAGAAAATTGAAGAAGTAACTCAAAAACTAGCTATCATGGAGTCAACTCTTACAATTAGGAACTCTGATTTGGCAGCACTTCAAAATAATTTGAAGGAGCTAGAGGAGCTACGAGAGATGAAAGAGGATATTGACCGAAAAAATGAGCAAACAGCTAATATTTTGAAGATGCAAGGGATTCAGCTAGCTGAGATGGAAGCACTTTATAAGGAAGAGCAAATTTTAAGGAAACGCTATTTCAACGTGATAGAAGATATGAAAGGAAAGATTAGGGTTTATTGTCGACTTAGACCTCTTAATGAGAAAGAAATTATCGAAAAAGAAAAAAACGTGCTTACAAGTCTAGACGAGTTCACAGTTGAACATCCATGGAAAGACGATAAGCCAAAGCAACATATGTATGATCACGTATTTGATGGCACTGTCACCCAGGAAGATGTCTTTGAAGATACACGGTATCTAGTTCAGTCTGCCGTTGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGTAAGACATTTACAATATATGGATCTGACGAGCACCCTGGACTAACACCGCGTGCCATTGGAGAACTTTTTCGGATTTTGAAGCAAGATAGTAACAAGTTCTCATTTTCATTGAAGGCATACATGGTAGAATTATATCAAGATACATTGGTTGATCTTCTTTTGCCGAAGAATGCTAAACGACCGAAATTAGATATAAAAAAGGATACAAAGGGAATGGTATCCATTGAAAATGTCACAATAGCTTCTATCTCAACATTTGAAGAATTGAAAAAAATTATTTATCGAGGATCAGAGCAACGACATACTTCAGGGACTCAAATGAATGAAGAAAGTTCTAGATCACATTTGATACTTTCAGTTATTATTGAAAGTACCCACCTTCAGTCACAATCTGTTTCTAAAGGAAAGGTATGGTACTGGTAG 3345 38.86 MTFGMAQSTRTMGSSFNSSSANDDAFLQSFAAASNGDDYDSDGSNFAPPTPTTMAIPEELAAVIPLIDRFQVEGFLRIMHKQIHSSGRRGFFSKRSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRAIKLFQIILKYMGVDSSDRVNATSLDERIELVGKLYKHSLKRSELRDELFIQITKQTRNSPDRQYLIKAWELMYLCASAMPPSKDIGGYLTEYVHNVAQGTSTDPEVRVLALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGIIKLSAHSSFSLFECRKIVSGGAKALDLGNEEYVGLDDNKYIGDLLSEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFITSPESCTEWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSVAVGSMLGDSSCNFKTQSVEAYEKRVHDLSKGIEESQRNAEQFRKELHEKNKQEVVMREELETLKESLRFEKQNLVEATRNLERLRLQYDEKDKEHQDMLMEKRGMEARMAKLSATVLETNVKKDTAGIDEQLLQKLQDELRFRNNELQASEEIKKKLVNEKLLLEQRIFGHEKKTSIEMECLQKSFEHERKVLKLRVAELEKKIEEVTQKLAIMESTLTIRNSDLAALQNNLKELEELREMKEDIDRKNEQTANILKMQGIQLAEMEALYKEEQILRKRYFNVIEDMKGKIRVYCRLRPLNEKEIIEKEKNVLTSLDEFTVEHPWKDDKPKQHMYDHVFDGTVTQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDEHPGLTPRAIGELFRILKQDSNKFSFSLKAYMVELYQDTLVDLLLPKNAKRPKLDIKKDTKGMVSIENVTIASISTFEELKKIIYRGSEQRHTSGTQMNEESSRSHLILSVIIESTHLQSQSVSKGKVWYW 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14632039 14654853 - Sed0006453.2 Sed04g1057 709660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1057 1114 SUPERFAMILY Prismane protein-like 831 892 IPR011254 GO:0003824(InterPro)|GO:0016491(InterPro)
Sed04g1057 1114 PANTHER MYOSIN VII, XV 108 594 IPR051567 -
Sed04g1057 1114 Gene3D Kinesin motor domain 883 1113 IPR036961 -
Sed04g1057 1114 Coils Coil 655 699 - -
Sed04g1057 1114 Gene3D - 496 603 IPR011993 -
Sed04g1057 1114 ProSiteProfiles MyTH4 domain profile. 113 272 IPR000857 GO:0005856(InterPro)
Sed04g1057 1114 Pfam MyTH4 domain 166 270 IPR000857 GO:0005856(InterPro)
Sed04g1057 1114 SUPERFAMILY Second domain of FERM 376 493 IPR035963 -
Sed04g1057 1114 Pfam PTB domain (IRS-1 type) 509 585 IPR002404 -
Sed04g1057 1114 Coils Coil 731 765 - -
Sed04g1057 1114 ProSiteProfiles Kinesin motor domain profile. 888 1114 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed04g1057 1114 SMART MyTH4_1 113 272 IPR000857 GO:0005856(InterPro)
Sed04g1057 1114 Coils Coil 616 650 - -
Sed04g1057 1114 Gene3D - 390 491 IPR014352 -
Sed04g1057 1114 Gene3D MyTH4 domain 93 274 IPR038185 -
Sed04g1057 1114 PRINTS Kinesin heavy chain signature 960 981 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed04g1057 1114 PRINTS Kinesin heavy chain signature 1079 1096 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed04g1057 1114 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 496 604 - -
Sed04g1057 1114 SMART kinesin_4 886 1110 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed04g1057 1114 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 276 380 - -
Sed04g1057 1114 CDD FERM_C_KCBP 495 601 - -
Sed04g1057 1114 Gene3D - 276 381 - -
Sed04g1057 1114 CDD FERM_B-lobe 393 491 IPR019748 -
Sed04g1057 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1111 IPR027417 -
Sed04g1057 1114 ProSiteProfiles FERM domain profile. 277 592 IPR000299 GO:0005856(InterPro)
Sed04g1057 1114 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 92 274 - -
Sed04g1057 1114 FunFam Kinesin-like calmodulin binding protein 381 492 - -
Sed04g1057 1114 Pfam FERM central domain 383 499 IPR019748 -
Sed04g1057 1114 SUPERFAMILY PH domain-like 498 586 - -
Sed04g1057 1114 SMART B41_5 273 498 IPR019749 -
Sed04g1057 1114 Coils Coil 781 853 - -
Sed04g1057 1114 Pfam Kinesin motor domain 894 1106 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1057 Sed-Chr4:14632039 Sed08g1695 Sed-Chr8:32035319 8.80E-41 dispersed
Sed04g1056 Sed-Chr4:14632039 Sed04g1057 Sed-Chr4:14632039 0.00E+00 tandem
Sed04g1057 Sed-Chr4:14632039 Sed04g1058 Sed-Chr4:14632039 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1057 K27887 - csv:101206704 1933.69