Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1060 ATGGCCAAGTTAGCCACATTTACCCTTTCCTTCTTCTTGTGGTTCATTTTGGCTTCTAGAGTCTCCGCCAGCTCTCGAGCCGCGGATCTCGTGCAGACAGAGTTCTTGAAGGTTCCCTTGTCGGACTTCGAGAACTCTGTCGTCTCCACCATCGGCCTCGTGCGACAGGTTATGGCCATTTTCGGTCCCTTTGGTAGTTTTCTGGGTGATTCGCGACTTTCCACCGCCATTTCCGACTGCTTGGATTTGCTTGACGCTTCTAGTGACCAGTTGGGGTGGTCCCTCTCGGCTACTAAAAATCCCAATGGTAAAAACAACAGCACAGGAAACCTGAGTTCGGATCTAAAGACATGGCTAAGCGCCTCAGTGGTAAATCCAGAAACGTGCATGGAAGGATTCGAGGGCACAAACAGCATCGTCAAAGGCCTTGCATCCCAAGCCATCCACCAGTTAACCTCACAGCTCTTCGATCTTCTTTCCATGGTCAAATCCATCTCTAATAATCAGCCCGCTCGAAAACTGAAGGCCGAGTTCCCTTCCTGGCTCGAACCCCACGACCGCAAACTGCTCGAGGGTAACGATTTCGCTGCCGATGCCACTGTCGCCGCCGACGGCACCGGGGACTTCACCACCGTCATGGATGCGGTTGCGGCGGCGCCCGACAATAGCATGCGGCGCTATGTGATTCACATTAAGAGAGGCGTGTATTTTGAGAATGTTGAGATTAAGAAGAAGAAATGGAATCTTGTGATGGTTGGAGATGGTGTTGATGCTACTGTTATTTCCGGTAATCGGAGCTTTATCGACGGCTGGACCACTTTCCGATCAGCGACCTTCGCTGTTAGCGGACGAGGATTCATAGCGCGGGACATAACGTTTGAAAATACTGCAGGGCCCGAGAAACACCAAGCAGTGGCACTAAGATCTGACTCTGACCTATCAGTATTCTTTAGATGTCGTATCAAAGGCTACCAAGACACGCTCTACACCCACACCATGCGCCAATTCTACCGCGAGTGCCACATAAGTGGCACAGTCGACTTCCTCTTTGGCGACGCCACCGTCGTTTTCCAAAACTGCACCATTCTTGCGAAGAAAGGTCTCCCTAACCAGAAAAACACCATCACAGCTCAAGGCCGCAAGGACCCAAACCAGCCCACGGGCTTCTCCATTCAGTTCTGCAACATCACGGCCGATTCGGACCTCCAACCATTCGTTAATTCCACATATACGTACCTCGGTAGGCCATGGAAGGAATATTCAAGAACCATAATAATGCAGTCATATATGGGCAATGCTATTAGGCCAGAAGGTTGGCTCGAGTGGAATGCTGATTTTGCATTGAGTACTTTGTTTTATGCTGAATTTATGAATTTCGGGCCCGGGGCGGGTTTGGAAAAGCGGGTGGGTTGGCCGGGTTACCATAGATTGAATCAGACGAGTGAAGCTACAAATTTTACTGTGTCTCAGTTCATTGAAGGGAATCTGTGGTTGCCGTCTACGGGTGTCAAATTCAGTGCTGGATTGGGAGCTATTTAA 1539 50.1 MAKLATFTLSFFLWFILASRVSASSRAADLVQTEFLKVPLSDFENSVVSTIGLVRQVMAIFGPFGSFLGDSRLSTAISDCLDLLDASSDQLGWSLSATKNPNGKNNSTGNLSSDLKTWLSASVVNPETCMEGFEGTNSIVKGLASQAIHQLTSQLFDLLSMVKSISNNQPARKLKAEFPSWLEPHDRKLLEGNDFAADATVAADGTGDFTTVMDAVAAAPDNSMRRYVIHIKRGVYFENVEIKKKKWNLVMVGDGVDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFFRCRIKGYQDTLYTHTMRQFYRECHISGTVDFLFGDATVVFQNCTILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNITADSDLQPFVNSTYTYLGRPWKEYSRTIIMQSYMGNAIRPEGWLEWNADFALSTLFYAEFMNFGPGAGLEKRVGWPGYHRLNQTSEATNFTVSQFIEGNLWLPSTGVKFSAGLGAI 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14840518 14845400 - Sed0025927.1 Sed04g1060 709663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1060 512 Gene3D - 192 509 IPR012334 -
Sed04g1060 512 CDD PMEI-like_4 6 166 - -
Sed04g1060 512 FunFam Pectinesterase 192 509 - -
Sed04g1060 512 SUPERFAMILY Pectin lyase-like 196 508 IPR011050 -
Sed04g1060 512 SMART PMEI_2 26 165 IPR006501 GO:0004857(InterPro)
Sed04g1060 512 Pfam Plant invertase/pectin methylesterase inhibitor 72 159 IPR006501 GO:0004857(InterPro)
Sed04g1060 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 168 IPR035513 -
Sed04g1060 512 Pfam Pectinesterase 198 495 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g1060 512 PANTHER PECTINESTERASE 71 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed04g1060 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 167 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1060 Sed-Chr4:14840518 Sed07g0565 Sed-Chr7:4262324 4.70E-122 dispersed
Sed04g1060 Sed-Chr4:14840518 Sed04g0442 Sed-Chr4:3267928 1.10E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1060 K01051 - csv:101207185 812.372