Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1067 ATGGCGGCTGTCCAAACGCCGCTGCTGTTTTTGGCTTTCCTCTGCGCCTCAATCCATACCGCCCTTTCCTTTACTGATCCTCGCGATTCTGCAGTGCTGGAGTCCCTAAAAAGGGAATGGCAAAATACACCACCAAGCTGGGGAACATCAAATGATCCATGTGGAACTTCATGGGAAGGAATTACTTGCACCAATTCAAGAGTAACTGCACTGAGATTGTCAACTATGGGCTTGAAAGGTGGCCTTGGTGGTGACATTGGAGGCCTCACTGAACTTAAATCATTGGACCTTTCGTTCAATCAAGATCTCACTGGTTCAATCTCACCAGCATTAGGGGAACTCAAGAATTTGAATATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATACCTGAAGAACTGGGCAATCTTTCTGAGCTAGCCTTCTTGGCTTTGAATTCTAACCAGTTCAGTGGTACAATACCACCATCTCTGGGCAAACTCTCAAAACTCTATTGGCTGGACCTGGCAGATAATAAATTAACTGGTAGTATCCCAGTCTCAACTCCCCAAACTCCTGGTTTGGACCTCCTTCTGATGGCTAAACATTTTCATTTCAACAAAAACCAGCTATCAGGTACCATTTCACCTAAACTTTTTAGCTCTGAAATGGTGTTAATCCACATATTATTTGATGGAAACAAACTTTCGGGGAGTATCCCAGCATCATTGGGACTTGTTAAGACCCTTGAGGTTCTACGGCTTGATCGAAATTCTCTAACAGGACCTGTCCCATCTAATCTGAGCAACTTAATACATGTCAATGAATTGAATTTAGCCAATAATAAGTTGACTGGTCCAATGCCAGACTTAACTGATATACGTTCACTGAATTATGTGGACCTTAGTAACAACACATTTGATTCAGCACCAGCTCCAGATTGGTTCTCAACTCTACCATTGATCACCACTCTGGTTGTTGAACATGGGTCGATACAAGGATCAGTACCAGTAGGACTCTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAACAACGAATTCAATGGGACATTGAGTATGGGGGAGAAAGTCAACCAACAGTTGCAGCTGGTTGATTTGCAGAGTAACAATATATCTAAGATAACTCTTGGTCCAGGATATGCCAATACTTTGATGCTGATAGGGAATCCTGTGTGTAGCACTGATCCTACCGTCTCTAATTCAAACTATTGCCAGCTTCGAAGTCATCCGGTGAAACCGTATTCGACCAGTCTTTTGCTGTGTGGAAGTAAGTCATGTCCTCCAAATCAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTGGAAGGAACTTTATACTTTAGAGCACCATCATTCAGGGAATTGTCCAATGCAACTTTGTTTCACTTATTGGAATCAACTCTTTGGGAAAAACTGGAGCTTATGCCTGGTTCAGTTTCTATTCAAAACCCTTTCTTTAATGTTGATGATTATCTTCAGACACAGCTTGCACTTTTCCCACCCAATGGAATACATTTTAATAGGTCGGAGATTCTGAGGATTGGGTTTGACTTGAGTAATCAAACTTACAAACCTCCCTTCGAATTCGGGCCATATTTTTTCATTGCATCTCCATATGGTTTTTCAGACGGTGCGGGTAAGGGAACTACAATCAGCTTGGGAGTGATAATTGGGATAGCAATTGGTTGTTCCTTTCTCGTTCTAGTCCTCATTGGAGTCGGACTATATGCGATTCGACAAAAGAAACGTGCGGAAAAGGCCATCATATTGAGTCGGCCATTTGCTTCTTGGGCACCTAGTGGAAATGATAGTGGAGGTGCACCACAATTGAAGGGAGCTAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCACGAGCAATGAGATAGGATCTGGAGGGTACGGCAAGGTATATAGAGGATTGCTTGTGGATGGACAAGTAGTTGCAATCAAAAGAGCTCAGCAAGGATCAATGCAGGGTGGCGTTGAGTTCAGGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGTCTCGTTGGTTTTTGTTTTGAACAGGGAGAGCAGATGCTTGTTTATGAATTTATGCCTAATGGAACATTAAGAGATGGTCTATGTGGAGATTCTGGTATTCGTCTTGATTGGAAGAGAAGACTTCGTATTGCTCTTGGGTCTGCCAGAGGATTGACTTACTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGATATTAAGTCCACCAACATTCTTTTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGCAAAGGGACATGTTTCGACTCAAGTTAAAGGAACATTGGGTTATTTAGATCCTGAATATTACATGACTCAACAATTGACGGAGAAAAGTGACGTATATAGCTTCGGAGTTGTCATGTTAGAACTGCTAACTGCTAAGCTGCCTATTGAAAAGGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTGATGAACAAAAACGATGAAGAATATTACGGTCTGAAGCAGCTAATGGATTCAACCATAACAAATACTACAACGACTATTACTGGACTTGGAAGGTTCTTGGAGTTGGCTATGAAATGTGTTGACGAATCAGCAGATGAGCGCCCCACGATGAGTGAAGTGGTCAAGGAAATCGAGAGTATATTGCAGAATGATGGAATAAATACGAACCCGACATCTGCGTCCTCGTCTGCAACCGACTTTGCAACGTCGAAATCGGCTCCTAGGCATCCCTATAATGATCCCATCACAAAAAAGGACACTAATGACAGTAGTAGTTCTTTTAATTACAGTGGTGGATACACTCTTTCAACAAAAGTAGAACCAAAATAG 2910 41.86 MAAVQTPLLFLAFLCASIHTALSFTDPRDSAVLESLKREWQNTPPSWGTSNDPCGTSWEGITCTNSRVTALRLSTMGLKGGLGGDIGGLTELKSLDLSFNQDLTGSISPALGELKNLNILILAGCGFSGNIPEELGNLSELAFLALNSNQFSGTIPPSLGKLSKLYWLDLADNKLTGSIPVSTPQTPGLDLLLMAKHFHFNKNQLSGTISPKLFSSEMVLIHILFDGNKLSGSIPASLGLVKTLEVLRLDRNSLTGPVPSNLSNLIHVNELNLANNKLTGPMPDLTDIRSLNYVDLSNNTFDSAPAPDWFSTLPLITTLVVEHGSIQGSVPVGLFSLPQIQQIKLKNNEFNGTLSMGEKVNQQLQLVDLQSNNISKITLGPGYANTLMLIGNPVCSTDPTVSNSNYCQLRSHPVKPYSTSLLLCGSKSCPPNQKLNPQSCECAFPLEGTLYFRAPSFRELSNATLFHLLESTLWEKLELMPGSVSIQNPFFNVDDYLQTQLALFPPNGIHFNRSEILRIGFDLSNQTYKPPFEFGPYFFIASPYGFSDGAGKGTTISLGVIIGIAIGCSFLVLVLIGVGLYAIRQKKRAEKAIILSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSTSNEIGSGGYGKVYRGLLVDGQVVAIKRAQQGSMQGGVEFRTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDGLCGDSGIRLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSAKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKNDEEYYGLKQLMDSTITNTTTTITGLGRFLELAMKCVDESADERPTMSEVVKEIESILQNDGINTNPTSASSSATDFATSKSAPRHPYNDPITKKDTNDSSSSFNYSGGYTLSTKVEPK 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15291957 15302308 - Sed0025301.1 Sed04g1067 709670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1067 969 FunFam Leucine-rich repeat protein kinase family protein 602 708 - -
Sed04g1067 969 ProSitePatterns Protein kinases ATP-binding region signature. 639 661 IPR017441 GO:0005524(InterPro)
Sed04g1067 969 MobiDBLite consensus disorder prediction 909 969 - -
Sed04g1067 969 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 709 920 - -
Sed04g1067 969 MobiDBLite consensus disorder prediction 944 969 - -
Sed04g1067 969 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Sed04g1067 969 PANTHER RECEPTOR-LIKE PROTEIN 55 45 905 - -
Sed04g1067 969 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515(InterPro)
Sed04g1067 969 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Sed04g1067 969 Pfam Leucine Rich Repeat 142 162 IPR001611 GO:0005515(InterPro)
Sed04g1067 969 FunFam Predicted protein 187 410 - -
Sed04g1067 969 ProSiteProfiles Protein kinase domain profile. 633 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1067 969 FunFam Leucine-rich repeat family protein 28 184 - -
Sed04g1067 969 SUPERFAMILY L domain-like 42 301 - -
Sed04g1067 969 CDD STKc_IRAK 639 907 - -
Sed04g1067 969 Gene3D Transferase(Phosphotransferase) domain 1 709 928 - -
Sed04g1067 969 SMART serkin_6 633 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1067 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 753 765 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1067 969 Pfam Protein tyrosine and serine/threonine kinase 635 903 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1067 969 SUPERFAMILY L domain-like 288 400 - -
Sed04g1067 969 Gene3D Phosphorylase Kinase; domain 1 607 708 - -
Sed04g1067 969 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Sed04g1067 969 Gene3D Ribonuclease Inhibitor 188 380 IPR032675 -
Sed04g1067 969 MobiDBLite consensus disorder prediction 909 932 - -
Sed04g1067 969 SUPERFAMILY Protein kinase-like (PK-like) 618 929 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0149 Sed-Chr2:31375784 Sed04g1067 Sed-Chr4:15291957 2.00E-268 dispersed
Sed02g0150 Sed-Chr2:31378103 Sed04g1067 Sed-Chr4:15291957 4.00E-167 dispersed
Sed02g0917 Sed-Chr2:46603252 Sed04g1067 Sed-Chr4:15291957 0.00E+00 dispersed
Sed02g0918 Sed-Chr2:46603252 Sed04g1067 Sed-Chr4:15291957 5.5e-310 dispersed
Sed04g1067 Sed-Chr4:15291957 Sed14g0553 Sed-Chr14:5575599 1.00E-93 dispersed
Sed04g1067 Sed-Chr4:15291957 Sed02g0147 Sed-Chr2:31344702 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78976 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1067 - - - 0.0