Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1067 | ATGGCGGCTGTCCAAACGCCGCTGCTGTTTTTGGCTTTCCTCTGCGCCTCAATCCATACCGCCCTTTCCTTTACTGATCCTCGCGATTCTGCAGTGCTGGAGTCCCTAAAAAGGGAATGGCAAAATACACCACCAAGCTGGGGAACATCAAATGATCCATGTGGAACTTCATGGGAAGGAATTACTTGCACCAATTCAAGAGTAACTGCACTGAGATTGTCAACTATGGGCTTGAAAGGTGGCCTTGGTGGTGACATTGGAGGCCTCACTGAACTTAAATCATTGGACCTTTCGTTCAATCAAGATCTCACTGGTTCAATCTCACCAGCATTAGGGGAACTCAAGAATTTGAATATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATACCTGAAGAACTGGGCAATCTTTCTGAGCTAGCCTTCTTGGCTTTGAATTCTAACCAGTTCAGTGGTACAATACCACCATCTCTGGGCAAACTCTCAAAACTCTATTGGCTGGACCTGGCAGATAATAAATTAACTGGTAGTATCCCAGTCTCAACTCCCCAAACTCCTGGTTTGGACCTCCTTCTGATGGCTAAACATTTTCATTTCAACAAAAACCAGCTATCAGGTACCATTTCACCTAAACTTTTTAGCTCTGAAATGGTGTTAATCCACATATTATTTGATGGAAACAAACTTTCGGGGAGTATCCCAGCATCATTGGGACTTGTTAAGACCCTTGAGGTTCTACGGCTTGATCGAAATTCTCTAACAGGACCTGTCCCATCTAATCTGAGCAACTTAATACATGTCAATGAATTGAATTTAGCCAATAATAAGTTGACTGGTCCAATGCCAGACTTAACTGATATACGTTCACTGAATTATGTGGACCTTAGTAACAACACATTTGATTCAGCACCAGCTCCAGATTGGTTCTCAACTCTACCATTGATCACCACTCTGGTTGTTGAACATGGGTCGATACAAGGATCAGTACCAGTAGGACTCTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAACAACGAATTCAATGGGACATTGAGTATGGGGGAGAAAGTCAACCAACAGTTGCAGCTGGTTGATTTGCAGAGTAACAATATATCTAAGATAACTCTTGGTCCAGGATATGCCAATACTTTGATGCTGATAGGGAATCCTGTGTGTAGCACTGATCCTACCGTCTCTAATTCAAACTATTGCCAGCTTCGAAGTCATCCGGTGAAACCGTATTCGACCAGTCTTTTGCTGTGTGGAAGTAAGTCATGTCCTCCAAATCAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTGGAAGGAACTTTATACTTTAGAGCACCATCATTCAGGGAATTGTCCAATGCAACTTTGTTTCACTTATTGGAATCAACTCTTTGGGAAAAACTGGAGCTTATGCCTGGTTCAGTTTCTATTCAAAACCCTTTCTTTAATGTTGATGATTATCTTCAGACACAGCTTGCACTTTTCCCACCCAATGGAATACATTTTAATAGGTCGGAGATTCTGAGGATTGGGTTTGACTTGAGTAATCAAACTTACAAACCTCCCTTCGAATTCGGGCCATATTTTTTCATTGCATCTCCATATGGTTTTTCAGACGGTGCGGGTAAGGGAACTACAATCAGCTTGGGAGTGATAATTGGGATAGCAATTGGTTGTTCCTTTCTCGTTCTAGTCCTCATTGGAGTCGGACTATATGCGATTCGACAAAAGAAACGTGCGGAAAAGGCCATCATATTGAGTCGGCCATTTGCTTCTTGGGCACCTAGTGGAAATGATAGTGGAGGTGCACCACAATTGAAGGGAGCTAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCACGAGCAATGAGATAGGATCTGGAGGGTACGGCAAGGTATATAGAGGATTGCTTGTGGATGGACAAGTAGTTGCAATCAAAAGAGCTCAGCAAGGATCAATGCAGGGTGGCGTTGAGTTCAGGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGTCTCGTTGGTTTTTGTTTTGAACAGGGAGAGCAGATGCTTGTTTATGAATTTATGCCTAATGGAACATTAAGAGATGGTCTATGTGGAGATTCTGGTATTCGTCTTGATTGGAAGAGAAGACTTCGTATTGCTCTTGGGTCTGCCAGAGGATTGACTTACTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGATATTAAGTCCACCAACATTCTTTTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGCAAAGGGACATGTTTCGACTCAAGTTAAAGGAACATTGGGTTATTTAGATCCTGAATATTACATGACTCAACAATTGACGGAGAAAAGTGACGTATATAGCTTCGGAGTTGTCATGTTAGAACTGCTAACTGCTAAGCTGCCTATTGAAAAGGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTGATGAACAAAAACGATGAAGAATATTACGGTCTGAAGCAGCTAATGGATTCAACCATAACAAATACTACAACGACTATTACTGGACTTGGAAGGTTCTTGGAGTTGGCTATGAAATGTGTTGACGAATCAGCAGATGAGCGCCCCACGATGAGTGAAGTGGTCAAGGAAATCGAGAGTATATTGCAGAATGATGGAATAAATACGAACCCGACATCTGCGTCCTCGTCTGCAACCGACTTTGCAACGTCGAAATCGGCTCCTAGGCATCCCTATAATGATCCCATCACAAAAAAGGACACTAATGACAGTAGTAGTTCTTTTAATTACAGTGGTGGATACACTCTTTCAACAAAAGTAGAACCAAAATAG | 2910 | 41.86 | MAAVQTPLLFLAFLCASIHTALSFTDPRDSAVLESLKREWQNTPPSWGTSNDPCGTSWEGITCTNSRVTALRLSTMGLKGGLGGDIGGLTELKSLDLSFNQDLTGSISPALGELKNLNILILAGCGFSGNIPEELGNLSELAFLALNSNQFSGTIPPSLGKLSKLYWLDLADNKLTGSIPVSTPQTPGLDLLLMAKHFHFNKNQLSGTISPKLFSSEMVLIHILFDGNKLSGSIPASLGLVKTLEVLRLDRNSLTGPVPSNLSNLIHVNELNLANNKLTGPMPDLTDIRSLNYVDLSNNTFDSAPAPDWFSTLPLITTLVVEHGSIQGSVPVGLFSLPQIQQIKLKNNEFNGTLSMGEKVNQQLQLVDLQSNNISKITLGPGYANTLMLIGNPVCSTDPTVSNSNYCQLRSHPVKPYSTSLLLCGSKSCPPNQKLNPQSCECAFPLEGTLYFRAPSFRELSNATLFHLLESTLWEKLELMPGSVSIQNPFFNVDDYLQTQLALFPPNGIHFNRSEILRIGFDLSNQTYKPPFEFGPYFFIASPYGFSDGAGKGTTISLGVIIGIAIGCSFLVLVLIGVGLYAIRQKKRAEKAIILSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSTSNEIGSGGYGKVYRGLLVDGQVVAIKRAQQGSMQGGVEFRTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDGLCGDSGIRLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSAKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKNDEEYYGLKQLMDSTITNTTTTITGLGRFLELAMKCVDESADERPTMSEVVKEIESILQNDGINTNPTSASSSATDFATSKSAPRHPYNDPITKKDTNDSSSSFNYSGGYTLSTKVEPK | 969 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15291957 | 15302308 | - | Sed0025301.1 | Sed04g1067 | 709670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1067 | 969 | FunFam | Leucine-rich repeat protein kinase family protein | 602 | 708 | - | - | |
Sed04g1067 | 969 | ProSitePatterns | Protein kinases ATP-binding region signature. | 639 | 661 | IPR017441 | GO:0005524(InterPro) | |
Sed04g1067 | 969 | MobiDBLite | consensus disorder prediction | 909 | 969 | - | - | |
Sed04g1067 | 969 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 709 | 920 | - | - | |
Sed04g1067 | 969 | MobiDBLite | consensus disorder prediction | 944 | 969 | - | - | |
Sed04g1067 | 969 | Gene3D | Ribonuclease Inhibitor | 29 | 187 | IPR032675 | - | |
Sed04g1067 | 969 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 45 | 905 | - | - | |
Sed04g1067 | 969 | Pfam | Leucine Rich Repeat | 244 | 265 | IPR001611 | GO:0005515(InterPro) | |
Sed04g1067 | 969 | Pfam | Leucine Rich Repeat | 116 | 138 | IPR001611 | GO:0005515(InterPro) | |
Sed04g1067 | 969 | Pfam | Leucine Rich Repeat | 142 | 162 | IPR001611 | GO:0005515(InterPro) | |
Sed04g1067 | 969 | FunFam | Predicted protein | 187 | 410 | - | - | |
Sed04g1067 | 969 | ProSiteProfiles | Protein kinase domain profile. | 633 | 908 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g1067 | 969 | FunFam | Leucine-rich repeat family protein | 28 | 184 | - | - | |
Sed04g1067 | 969 | SUPERFAMILY | L domain-like | 42 | 301 | - | - | |
Sed04g1067 | 969 | CDD | STKc_IRAK | 639 | 907 | - | - | |
Sed04g1067 | 969 | Gene3D | Transferase(Phosphotransferase) domain 1 | 709 | 928 | - | - | |
Sed04g1067 | 969 | SMART | serkin_6 | 633 | 908 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g1067 | 969 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 753 | 765 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g1067 | 969 | Pfam | Protein tyrosine and serine/threonine kinase | 635 | 903 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g1067 | 969 | SUPERFAMILY | L domain-like | 288 | 400 | - | - | |
Sed04g1067 | 969 | Gene3D | Phosphorylase Kinase; domain 1 | 607 | 708 | - | - | |
Sed04g1067 | 969 | Pfam | Leucine rich repeat N-terminal domain | 28 | 64 | IPR013210 | - | |
Sed04g1067 | 969 | Gene3D | Ribonuclease Inhibitor | 188 | 380 | IPR032675 | - | |
Sed04g1067 | 969 | MobiDBLite | consensus disorder prediction | 909 | 932 | - | - | |
Sed04g1067 | 969 | SUPERFAMILY | Protein kinase-like (PK-like) | 618 | 929 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0149 | Sed-Chr2:31375784 | Sed04g1067 | Sed-Chr4:15291957 | 2.00E-268 | dispersed | |
Sed02g0150 | Sed-Chr2:31378103 | Sed04g1067 | Sed-Chr4:15291957 | 4.00E-167 | dispersed | |
Sed02g0917 | Sed-Chr2:46603252 | Sed04g1067 | Sed-Chr4:15291957 | 0.00E+00 | dispersed | |
Sed02g0918 | Sed-Chr2:46603252 | Sed04g1067 | Sed-Chr4:15291957 | 5.5e-310 | dispersed | |
Sed04g1067 | Sed-Chr4:15291957 | Sed14g0553 | Sed-Chr14:5575599 | 1.00E-93 | dispersed | |
Sed04g1067 | Sed-Chr4:15291957 | Sed02g0147 | Sed-Chr2:31344702 | 0.00E+00 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78976 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-46 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1067 | - | - | - | 0.0 |