Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1090 ATGGCTTCGAGGACTTGCATGAATGTGTCGTGCGGAGCTTCCTCTTCTACTGAGTGGAGCAAAGGTTGGGCTCTGCGATCTGGCGAATTTGCTACTCTCTGCGATAAGTGCGGGTCTGCTTACGAGCAGTCAATTTTCTGCGATGTATTCCACTTAAAAGACTCTGGTTGGAGGGAGTGCACCTCATGTGGCAAGCATCTTCATTGCGGATGCATTGCTTCCAAGTTTCTGATGGAGCTTCATGACAGTGGGGGGGTGAACTGTATACACTGCGCAAAAAATTCAGGACTTCATATCACTGGTGCTGGCGAAAATATGAATGGGCTTGATACATCACAAGTTCAAAGTTCTGGTGATTTACAATCACTTTTAGTGGAAGATGGTAACAGTGATAGAGTAAGGCTCATTCAACCAGGAAGCAAGGCAGAGGGAAATGAGATTAGGGAATCACTCCTATTGCAAAGTAATATCAAAACTGGATCCCTAGTTCAAATGAAACATGAAGAAAATTTTCCTCTGGTGAAAAACGTTGGACATGTCCGTTCCTTGGAATTCAATCAGATGACAACAAACGGGTTGAATGAAACTGCCAAACAGGAAATCTGCAAAGCAGACAATGGAACAAAGTTTACTTATAATTCACTTGCTTTCGGTTGTGGTAACCCAAATCCTCTTCCTGGTGTTACTATAGATGAAAAAGAGGATAGCAAATCATCGTCTCCTTTGCTTCTAGGTTCTAGGTCACGTCACCTTATTCCAAAGCCCGCACGTGCACTATTTAATGTAGGCTTAGAGCCAAATACTTGCATGGTTTCACAAGTACGTGTAGCAAGGCCACCTGCTGAAGGTAGGGGACGGAATCAGTTGCTTCCTCGTTATTGGCCCAGGATTACAGACCAAGAGCTGCAGCAGATATCTGGAGCTTCAAATTCTACTGTTGTGCCATTGTTCGAAAAGACACTCAGTGCCAGTGATGCAGGTCGGATAGGCCGATTGGTTGTCCCAAAAGCCTGTGCTGAAGCATATTTCCCTCCAATATCCCAGCCAGAGGGCCTTCCTATAAGAATTCAAGATGTCAAAGGAAAAGAGTGGGTGTTTCAATTCAGGTTTTGGCCCAATAACAACAGTAGAATGTATGTTTTGGAAGGTGTTACTCCTTGCATACAGTCCATGCAGCTGCAAGCTGGTGATACTGTGACTTTTAGCCGCATGGATCCTGAAGGCAAACTTATTATGGGATTTCGCAAAGCATCAAGCTCTTCCATAATGCAGGATACTCATCCAACTGCACTTTCTACCGCTGGTTGCCATTCGAGTGAATTCTTTTCAAGTGTTTTTGAGAATCTTCCTATTTTGAGTGGCCATTCCGGCCTTCTTCAGTCCTTAAAGGGCAACATGGATCCCCAGCTCAATTTATTGCCTGGGTACTTCAATCAACCTGGTGCTGATATGAGCTGGCAAAAAGCTGAAAAACATGATGATAAATCAAGAGATGGCTTGCTCCTGTCTTCGATGCTGGTACCAGAGAGGAAAAGAACTCGTAATATAGGGACTAAAAGTAAAAGGCTGCTCGTTGATTGTCAAGATGCTCTGGAGTTGAAACTCAAATGGGAAGAGGTGCAGGATTTGCTTCGTCCACCACCAACTGTCAAACCAAGCAAGTTCATGGTTGAGGATCATGAATTTGAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAGGAGCATTTTTGTTGTCCGTTCAACTGGGGGACAAGAGCAATGGGCACAGTGTGATGATTGCTCAAAATGGCGAAGATTGCCGGTTGATGTTCTTCTGCCCTCCAAGTGGACATGTGTGGAAAATATTTGGGATCAAAGCATGAGTTCATGTTCTACACCCGAAGAACTGACAACAAGAGAACTGGAAAACATTCTCAGATTGAATAAGGAATTCAAGAGACAAAGAACTTTGGCTTTCAATAGAGCAATCCAGGATCATGAATCCTCCGGTCTGGATGCTCTGGCAAATGCTGCAACTTTAGGAGATAATGTCAGTGATACGGGTACGGCATCAGTTGCAACTACAACAAAGCATCCGAGGCATCGTCCTGGGTGCTCATGCATTGTGTGCATCCAACCTCCGAGCGGAAAGGGAAAGCACAAACCAACATGCACATGCAATGTTTGTATGACAGTTAAACGAAGATTTAAAACTCTAATGATGCGCAAGAAGAAGCGGCAATCTGAACGTGAAGCTGAAATTGCACAGAAGAATCAGCTTCAGTGGAGCTCTAGAGATGAATCTGAGTTGGACAACGCCGCTAGACATGTATCCCTGAACCTTGGTCCCTCCGAAAACGAAGGCCAACTGAAAAATGATTCCAGGAGCCAAAGTAATTTGGTCGAAACGGGAAAGGACCAATTAGATTTAAATTGCCATCCTGATCTAGAAAATGAAGTAGTACAAGGGGGGGTGTCGAACCGATGGAGCATGATGAGTCTTGTTCAAATAGCAAGCCTGCCATTGGAGACGTATTTGAAGCAGAATGGTCTTACAAGTTTGTTACCAGAGCCACAGGTAAGTTCGGCATCAATAGCGCCTGCGCAAGGCGTAAATGAGGAAGGGGCTCTGAATGACGATGGGTGTTTTGCTTCTGCTGCCCTGGATCAGGAAAGTGAGGGAGAAGAAATTTGCCAAAAAGATCAAAGTTGA 2694 44.51 MASRTCMNVSCGASSSTEWSKGWALRSGEFATLCDKCGSAYEQSIFCDVFHLKDSGWRECTSCGKHLHCGCIASKFLMELHDSGGVNCIHCAKNSGLHITGAGENMNGLDTSQVQSSGDLQSLLVEDGNSDRVRLIQPGSKAEGNEIRESLLLQSNIKTGSLVQMKHEENFPLVKNVGHVRSLEFNQMTTNGLNETAKQEICKADNGTKFTYNSLAFGCGNPNPLPGVTIDEKEDSKSSSPLLLGSRSRHLIPKPARALFNVGLEPNTCMVSQVRVARPPAEGRGRNQLLPRYWPRITDQELQQISGASNSTVVPLFEKTLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASSSSIMQDTHPTALSTAGCHSSEFFSSVFENLPILSGHSGLLQSLKGNMDPQLNLLPGYFNQPGADMSWQKAEKHDDKSRDGLLLSSMLVPERKRTRNIGTKSKRLLVDCQDALELKLKWEEVQDLLRPPPTVKPSKFMVEDHEFEEYEEPPVFGKRSIFVVRSTGGQEQWAQCDDCSKWRRLPVDVLLPSKWTCVENIWDQSMSSCSTPEELTTRELENILRLNKEFKRQRTLAFNRAIQDHESSGLDALANAATLGDNVSDTGTASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLQWSSRDESELDNAARHVSLNLGPSENEGQLKNDSRSQSNLVETGKDQLDLNCHPDLENEVVQGGVSNRWSMMSLVQIASLPLETYLKQNGLTSLLPEPQVSSASIAPAQGVNEEGALNDDGCFASAALDQESEGEEICQKDQS 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18858087 18863226 + Sed0027514.1 Sed04g1090 709693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1090 897 SMART B3_2 317 418 IPR003340 GO:0003677(InterPro)
Sed04g1090 897 MobiDBLite consensus disorder prediction 737 794 - -
Sed04g1090 897 ProSiteProfiles Zinc finger CW-type profile. 582 632 IPR011124 GO:0008270(InterPro)
Sed04g1090 897 Gene3D - 585 641 - -
Sed04g1090 897 SUPERFAMILY DNA-binding pseudobarrel domain 314 416 IPR015300 -
Sed04g1090 897 Pfam CW-type Zinc Finger 587 629 IPR011124 GO:0008270(InterPro)
Sed04g1090 897 FunFam B3 domain-containing transcription repressor VAL1 295 422 - -
Sed04g1090 897 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 856 - -
Sed04g1090 897 Gene3D - 295 421 IPR015300 -
Sed04g1090 897 MobiDBLite consensus disorder prediction 776 794 - -
Sed04g1090 897 Pfam B3 DNA binding domain 317 416 IPR003340 GO:0003677(InterPro)
Sed04g1090 897 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677(InterPro)
Sed04g1090 897 CDD B3_DNA 315 416 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0238 Sed-Chr4:1768366 Sed04g1090 Sed-Chr4:18858087 9.70E-221 dispersed
Sed04g1090 Sed-Chr4:18858087 Sed14g1413 Sed-Chr14:22786347 2.20E-159 dispersed
Sed04g1090 Sed-Chr4:18858087 Sed14g1412 Sed-Chr14:22786347 4.40E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38099 PF02362 B3 8.20E-16 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1090 K09287 - csv:101213503 1537.7