Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1100 ATGTTTTTCAGACTGTTCCTCATTCTTGTCTTAGCTCCTGCTGCTGTTTATTGTTTGGACACTGTTTTCAACGATGATGTCTTGGGGTTGATTGTGTTCAAAGCTGGCCTTCAAGATCCAATGGCTAAACTCATCACATGGAATGAAGATGATGAAACTCCCTGTAATTGGTATGGTGTCAAATGCAATCCTAAAACCAATAGGGTTTCTGAGCTTGTTCTTGATGGCCTCTCTTTGTCTGGCCACATTGACCGTGGACTCCTCAGGCTGCAGTTTCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCTCCATTAACTGTGCTCTTGCTCATCTTACTAATTTGCAAGTTCTTGATTTGAGTGATAATAGTTTATCTGGACCTATTCCTGAACAGCTTTTTCAGCAATGTGGGTCTATGAGAATTGTTTCATTTGCTAGAAACAACCTCACTGGAAATATCCCTCAATCCTTAACCTCTTGCTTTTCTCTTGAGATTCTTAACTTTTCATCAAATCACCTATCTGGAAAATTGCCTTCTGGGTTGTGGTATTTGAGGGGGATTCAGTCTTTGGATTTCTCAGACAACTTGCTTGAAGGGCAGATTTCTCCTGGGATTCAAAATTTGTTTGATTTGAAGCTTGTTAACTTACAAAAGAATCGATTTTCCGGACGGCTTCCTGAGGATATTGGTGGCTGCTTGCTTTTGAAATCAATTGATTTTAGTGAGAATATCCTTTCTGGGGTTCTTCCAGAGTCAATGCAGATGCTCAGCTCTTGCACTTATCTGAATTTAAGACGAAATTCGCTCATGGGCGAAGTCCCTCGTTGGATTGGGGAGCTTAAAAATCTTGAGACTTTAGATCTTTCTACCAATAAATTTTCTGGTCAGGTACCTAGTTCAATAGGCAACCTCCAATTGTTGAAGAAGTTTAATGTATCCATGAATTATCTTACTGGGAACTTGCCAGAATCCATGGCAGATTGTAGTAGTCTCTTGAGTGTTGATGCTAGCCATAATCATTTGAATGGCTATCTCCCTTCATGGATATTTAGAGCAGCTATGCCAATTTCTTCGTACAGACTTGGAGAAAATCTTTCATCTCCAACCTCTTTTGAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCTCATTCCATCTAATGTTGGAGAACTTGGTAACTTGCAGTTACTGAATATATCAAGAAACCATCTTGTGGGTTCTATTCCAAAAAGCATTGGTGATCTAAAATCAGTATATGCTCTTGACTTCAGTGATAATCAGCTAAATGAAAGTATTCCTGCTGAAATTGGAGGAGCCATTTCTCTTAAGGAGTTGAGGCTGGAGAAGAACTTCCTCACTGGGGAAATTCCAATCAACATTGACAAATGCTCCTTGTTAACATCCTTGGTTCTTTCTCACAACAACCTTACAGGCTCAATTCCTGTTGCTGTTGCAAATCTCTCAAACCTTGAAAATGTCGACTTATCTTTCAACAAACTGTCCGGAAGCCTACCGAAGGAGCTGACTAATCTTTCCCATCTTGTCTCCTTTAACATCTCCCACAATCACCTTGAGGGAGAACTCCCAGTTGGGGGCTTGTTCAACACCATATCTCCCTTGTCAATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCCGTCCATCCAAAACCGATCGTCCTAAACCCGAATTCTTCAGATACCAACAGCAATTCCCCCTCCCACAAGCACCATCATGAGATCATACTCAGCATATCTTCCATCATTGCTATTGGTGCAGCTTCTTTTATCTTACTTGGTGTGGTAGCTGTGACGATCCTCAACGTTCGTGCACGGTCCTTGCAGTCACGTTCAGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAGCTGCTCTCCAAAAACGAATCCGGACTGTGGAAAGCTGGTTATGTTTTCTGGTGATGCAGAGTTTGTAGTTGGTGCTCAAGCATTGCTGAACAAGGACTGTGAACTCGGTCGAGGCGGATTTGGAGTTGTTTACCGAACGGTGCTTCGAGATGCCTGTTTAGTTGCAATCAAGAAGCTAACCGTCACAAGCTTAATCAAATCAAGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGAGACATCAGGCATCGCAATCTTGTGGCACTTGAAGGCTATTACTGGACAACCTCCTTGCAGCTCCTCGTTTACAAATTCATCGAAAATGGAAGTTTGTATAAACATCTACATGATGGAACTGTGGAAAATTGTTTGTCTTGGCAGGAAAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGTCTAGCTTATTTGCATCAGAATAATATAATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTAGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATATTAAGCAGTAAAATTCAAAGTGCTTTAGGATACATGGCTCCCGAGTTCGCCTGCAAAACAGTGACTATAACCGAAAAATGTGATGTATATGGTTTTGGAATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAGGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCAGCTTTGGATGACGGCACGGTAGAGCACTGCGTCGATGAGAGGCTACGGTCGAATTTCCGTATCGAAGAGGCCATTCCTGTGATGAAACTTGGTTTGATATGTGCATCTCAAGTACCATCCAATAGACCAGACATGAATGAAGTTGTGAACATATTAGAGTTGATCCAATCCCCCTCGGAAGCTGATGAGGACTTGGAATGA 2868 41.98 MFFRLFLILVLAPAAVYCLDTVFNDDVLGLIVFKAGLQDPMAKLITWNEDDETPCNWYGVKCNPKTNRVSELVLDGLSLSGHIDRGLLRLQFLQILSLANNNFTGSINCALAHLTNLQVLDLSDNSLSGPIPEQLFQQCGSMRIVSFARNNLTGNIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGIQSLDFSDNLLEGQISPGIQNLFDLKLVNLQKNRFSGRLPEDIGGCLLLKSIDFSENILSGVLPESMQMLSSCTYLNLRRNSLMGEVPRWIGELKNLETLDLSTNKFSGQVPSSIGNLQLLKKFNVSMNYLTGNLPESMADCSSLLSVDASHNHLNGYLPSWIFRAAMPISSYRLGENLSSPTSFEGLQVLDLSSNVFSGLIPSNVGELGNLQLLNISRNHLVGSIPKSIGDLKSVYALDFSDNQLNESIPAEIGGAISLKELRLEKNFLTGEIPINIDKCSLLTSLVLSHNNLTGSIPVAVANLSNLENVDLSFNKLSGSLPKELTNLSHLVSFNISHNHLEGELPVGGLFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNSNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNVRARSLQSRSAALALSAGEDFSCSPKTNPDCGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYRTVLRDACLVAIKKLTVTSLIKSREDFESEVKKLGDIRHRNLVALEGYYWTTSLQLLVYKFIENGSLYKHLHDGTVENCLSWQERFKIVLGMAKGLAYLHQNNIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDDGTVEHCVDERLRSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEADEDLE 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20423064 20426810 + Sed0027675.2 Sed04g1100 709703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1100 955 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 330 464 IPR046959 -
Sed04g1100 955 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 24 302 - -
Sed04g1100 955 SUPERFAMILY Protein kinase-like (PK-like) 676 944 IPR011009 -
Sed04g1100 955 SMART LRR_sd22_2 187 210 - -
Sed04g1100 955 SMART LRR_sd22_2 114 129 - -
Sed04g1100 955 SMART LRR_sd22_2 283 309 - -
Sed04g1100 955 SMART LRR_sd22_2 494 520 - -
Sed04g1100 955 SUPERFAMILY L domain-like 41 352 - -
Sed04g1100 955 SMART serkin_6 672 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 400 422 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 116 135 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine Rich Repeat 377 398 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 Pfam Leucine rich repeat 473 531 IPR001611 GO:0005515(InterPro)
Sed04g1100 955 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524(InterPro)
Sed04g1100 955 SUPERFAMILY RNI-like 252 557 - -
Sed04g1100 955 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 749 950 - -
Sed04g1100 955 PRINTS Leucine-rich repeat signature 283 296 - -
Sed04g1100 955 PRINTS Leucine-rich repeat signature 117 130 - -
Sed04g1100 955 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Sed04g1100 955 Gene3D Ribonuclease Inhibitor 302 570 IPR032675 -
Sed04g1100 955 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Sed04g1100 955 Gene3D Ribonuclease Inhibitor 182 301 IPR032675 -
Sed04g1100 955 ProSiteProfiles Protein kinase domain profile. 672 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1100 955 Gene3D Transferase(Phosphotransferase) domain 1 749 954 - -
Sed04g1100 955 Gene3D Phosphorylase Kinase; domain 1 659 748 - -
Sed04g1100 955 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 666 748 - -
Sed04g1100 955 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 303 568 - -
Sed04g1100 955 SMART LRR_typ_2 211 235 IPR003591 -
Sed04g1100 955 SMART LRR_typ_2 398 422 IPR003591 -
Sed04g1100 955 SMART LRR_typ_2 494 517 IPR003591 -
Sed04g1100 955 SMART LRR_typ_2 114 138 IPR003591 -
Sed04g1100 955 SMART LRR_typ_2 90 113 IPR003591 -
Sed04g1100 955 SMART LRR_typ_2 518 542 IPR003591 -
Sed04g1100 955 SMART LRR_typ_2 283 307 IPR003591 -
Sed04g1100 955 Pfam Protein tyrosine and serine/threonine kinase 674 940 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1100 Sed-Chr4:20423064 Sed04g2966 Sed-Chr4:41078371 4.00E-159 dispersed
Sed04g1099 Sed-Chr4:20423064 Sed04g1100 Sed-Chr4:20423064 2.00E-299 tandem
Sed04g1100 Sed-Chr4:20423064 Sed04g1101 Sed-Chr4:20423064 2.00E-299 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78980 PF07714 PK_Tyr_Ser-Thr 4.50E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1100 - - - 0.0