Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1110 ATGAGTTGTAACGAGAAGAATAGAAGGGAAGATGATAGGGAAATCGAGCAGCAGCCAGTTAAGAGAAACTCTGTTGAGGCCGAACACAAATCGGTCATCCAAAATGGATCTATAACGGCTCAACAGTTGACGATAGACGATAATCTTCTTGTTGACCCAAAATTACTTTTGATTGGATCAAAAATTGGCGAGGGTGCTCATGGAAAGGTTTATGAAGGCAGGTACCGGAATCAAATTGTGGCTGTAAAAGTTCTTCATCGAGGGAGTACTCCAGAAGAAAAGGCAGCTCTTGAGAATCGTTTTTCCCGTGAAGTTATTATGATGTCTCGAGTAAAACATGAAAATCTCGTAAAGTTTATTGGAGCTTGTAAAGAACCTTTAATGGTGATAGTTACAGAACTATTACCAGGAATGTCACTCAGGAAGTATCTGACAAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATCAACTTTGCTTTGGATGTTGCTCATGCAATGGATTGTCTCCATGCGAATGGGATTATACATAGAGATCTGAAACCTGACAATTTGTTGCTGACGGCAAATCATAGGTCTGTGAAGCTTGCAGACTTTGGACTAGCAAGAGAAGAATCTGTTACTGAGATGATGACTGCAGAAACTGGGACTTACCGCTGGATGGCTCCGGAGTTGTACAGCACTGTGACATTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGCGACATACCTCCCGATCTAGCGTTTATAGTACAGTCGTGTTGGGTTGAAGATCCGAACATGAGGCCTAGCTTCAGCCAGATCATCCGCATGCTTAATGAATATCTATTTACACTCCCACATCCATCACCATCTTCACCAGCATCTGATTCAACTGAGACAGCAACAACTAGCAACGGTACCATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGCTTTCCTTCGCCAACTATTTGCTGCTAAGAAGGCTAAGAACTCGCAATAA 1125 43.29 MSCNEKNRREDDREIEQQPVKRNSVEAEHKSVIQNGSITAQQLTIDDNLLVDPKLLLIGSKIGEGAHGKVYEGRYRNQIVAVKVLHRGSTPEEKAALENRFSREVIMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLTNNRKQQLDPRMAINFALDVAHAMDCLHANGIIHRDLKPDNLLLTANHRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPHPSPSSPASDSTETATTSNGTITEFSARARGKFAFLRQLFAAKKAKNSQ 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21286536 21291531 + Sed0018298.1 Sed04g1110 709713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1110 374 SMART serkin_6 56 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 CDD STKc_MAP3K-like 62 317 - -
Sed04g1110 374 SUPERFAMILY Protein kinase-like (PK-like) 54 338 IPR011009 -
Sed04g1110 374 FunFam Kinase suppressor of Ras 1 45 135 - -
Sed04g1110 374 PRINTS Tyrosine kinase catalytic domain signature 244 266 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 PRINTS Tyrosine kinase catalytic domain signature 132 145 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 PRINTS Tyrosine kinase catalytic domain signature 170 188 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 PRINTS Tyrosine kinase catalytic domain signature 288 310 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 ProSitePatterns Protein kinases ATP-binding region signature. 62 83 IPR017441 GO:0005524(InterPro)
Sed04g1110 374 MobiDBLite consensus disorder prediction 1 28 - -
Sed04g1110 374 MobiDBLite consensus disorder prediction 328 347 - -
Sed04g1110 374 PANTHER SERINE-THREONINE PROTEIN KINASE 50 319 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g1110 374 Pfam Protein tyrosine and serine/threonine kinase 58 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 ProSiteProfiles Protein kinase domain profile. 56 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1110 374 Gene3D Phosphorylase Kinase; domain 1 44 135 - -
Sed04g1110 374 Gene3D Transferase(Phosphotransferase) domain 1 139 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1110 Sed-Chr4:21286536 Sed12g2475 Sed-Chr12:34347505 2.60E-114 dispersed
Sed04g1110 Sed-Chr4:21286536 Sed04g1113 Sed-Chr4:21370806 2.70E-32 proximal
Sed04g1110 Sed-Chr4:21286536 Sed04g1111 Sed-Chr4:21286536 7.00E-152 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78982 PF07714 PK_Tyr_Ser-Thr 1.50E-61 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1110 - - - 0.0