Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1111 ATGATGTCTCGAGTAAAACATGAAAATCTCGTAAAGTTTATTGGAGCTTGTAAAGAACCTTTAATGGTGATAGTTACAGAACTATTACCAGGAATGTCACTCAGGAAGTATCTGACAAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATCAACTTTGCTTTGGATGTTGCTCATGCAATGGATTGTCTCCATGCGAATGGGATTATACATAGAGATCTGAAACCTGACAATTTGTTGCTGACGGCAAATCATAGGTCTGTGAAGCTTGCAGACTTTGGACTAGCAAGAGAAGAATCTGTTACTGAGATGATGACTGCAGAAACTGGGACTTACCGCTGGATGGCTCCGGAGTTGTACAGCACTGTGACATTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGCGACATACCTCCCGATCTAGCGTTTATAGTACAGTCGTGTTGGGTTGAAGATCCGAACATGAGGCCTAGCTTCAGCCAGATCATCCGCATGCTTAATGAATATCTATTTACACTCCCACATCCATCACCATCTTCACCAGCATCTGATTCAACTGAGACAGCAACAACTAGCAACGGTACCATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGCTTTCCTTCGCCAACTATTTGCTGCTAAGAAGGCTAAGAACTCGCAATAA 807 43.87 MMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLTNNRKQQLDPRMAINFALDVAHAMDCLHANGIIHRDLKPDNLLLTANHRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPHPSPSSPASDSTETATTSNGTITEFSARARGKFAFLRQLFAAKKAKNSQ 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21286536 21291531 + Sed0018298.2 Sed04g1111 709714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1111 268 PANTHER SERINE-THREONINE PROTEIN KINASE 1 213 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g1111 268 CDD STKc_MAP3K-like 1 211 - -
Sed04g1111 268 SMART serkin_6 1 215 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 MobiDBLite consensus disorder prediction 222 241 - -
Sed04g1111 268 PIRSF TyrPK_CSF1-R 1 50 - -
Sed04g1111 268 PIRSF TyrPK_CSF1-R 30 252 - -
Sed04g1111 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 PRINTS Tyrosine kinase catalytic domain signature 26 39 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 PRINTS Tyrosine kinase catalytic domain signature 138 160 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 PRINTS Tyrosine kinase catalytic domain signature 182 204 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 PRINTS Tyrosine kinase catalytic domain signature 64 82 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 Gene3D Transferase(Phosphotransferase) domain 1 33 244 - -
Sed04g1111 268 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 FunFam serine/threonine-protein kinase HT1 31 233 - -
Sed04g1111 268 Gene3D Phosphorylase Kinase; domain 1 1 29 - -
Sed04g1111 268 Pfam Protein tyrosine and serine/threonine kinase 1 211 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1111 268 SUPERFAMILY Protein kinase-like (PK-like) 1 232 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1111 Sed-Chr4:21286536 Sed12g2475 Sed-Chr12:34347505 4.50E-92 dispersed
Sed04g1110 Sed-Chr4:21286536 Sed04g1111 Sed-Chr4:21286536 7.00E-152 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78983 PF07714 PK_Tyr_Ser-Thr 3.70E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1111 - - - 0.0