Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1121 ATGGGAAAAGGCCACAACTTTTTCAGTGAATTTCAGGCACACCCATTTCAGTTCATGCAGATTCCTGCACCAAAAACAGTTGATGGGTGCTTTAAATCACCCAATAAGAATAGAATATGGAAGATTCAACAATGGAAAAACTGTTCTTCATACCTCATTGCTTTGTTTTTTGCTCATCTTTTGGCTTTTGAATTTCAACCAGTCACTGGACAGATGTGGGATGGAGTGGCTGTTACGCAAGGAGATTTTCTAGCTCTTCAAGCTATAAAGCAGGAACTTGTTGATCTGAAAGGAGTTTTGCATAGCTGGAATGGCAGCAATGGAGCTTGTTCAGGGCAGTGGGTAGGCATCAAGTGTGTGAACGGGCAGGTCATTGCTATACAGCTTCCGTGGAAGGCTCTAGCCGGCCGCATTTCCGACATGATTGGGCAGCTCCGGGAGCTTCGGAAGCTCAGCCTCCACGACAATGTGATCTCCGGCATCATCCCCCGGTCGCTCGGGTACCTTCGGAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTTTCAGGGTCTATACCTTCTACAATTGGTAATCTTCCACTTCTTCGAACTCTTGATTTGAGCAACAATTTGCTCACTGGAGAAATTCCTTCTGGTTTAACTAATTCTACCAGATTGATAAGGGTTAATCTGAGCTACAATTCATTGTCGGGAGCTATTCCTAGTCGTTTTATGCAGTCATTTTCTCTTAGAATTCTTGCCCTTGAGCATAATAATATTTCTGGGACAATCCCAGATTCTTGGGGTGGTTCTGGAAACAGTACTTGCCCACTTGGGGTTCTAACGCTTGATCATAATGTCATATCTGGAGCAATTCCAGCTTCTTTGAGCAAATTGGAATGGCTTCAAGAGATTTCCATTAGTGAGAATAAGATCTCTGGGGCTATACCTGGTGAAATCGGCAGTCTGAAGAAGCTTCGCCTTTTGGATTTGTCAAACAACGCCATTAATGGCGGCTTACCTTCAAACTTCTCAAATCTATCCTCTCTTGAGTTATTGAATGTAGAAAATAATCGCCTTGAAAGCCAGATTTCAGGAGATATTGATAGATTGCAGAATCTCTCGGTGGTTAAGCTTGGGAAGAATCGTTTTAGTGGTGAGATTCCTGCAAGTTTTGGGAACATTTCTGCTATTAGCCAACTTGATTTATCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTGACGTCTTTTAATGTCTCTTACAACAAGCTCTCTGGCCCTGTCCCAATTCTTCTGTCAAATAAGTTCAATGCGAGCTCTTTTGTTGGGAACCTTCAAATCTGTGGTTTTAGTTCTTCAACCACATGTCTACCTGCATCCTCCCCACAGAATAATACAACTCCATCAATCGAGATCCCGAAACCGCATCAGCACAGCAAACTTAGTGTAAAGGACATAATTCTTATAGCGGCTGGAGCTCTGTTGGTGCTTCTATTTATTCTTTGCTCGATTATGCTCTGTTGTTTGTTGTCAAAAAGATCTGTTGCCAAAAAGAATGACAACACGACATCCAAACGAGTAGTTGCAAGGAGTGCTGAGAAGGCAGCACCGAGCAGTACCCAAGTTGGGGCAGGTGAAGCTGGAGGAAAACTAGTTCATTTTGATGGGCAATTTGTTTTCACTGCCGATGATCTTCTGTGTTCAACTGCGGAGATCATGGGCAAGAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGCAATGAAGTTGCAGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTCGAATCTGAAGTTGCAGGACTCGGAAAAATTCGACACCCAAATCTGATTGCTCTCAGAGCTTATTATATAGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCTAGAGGAAGCCTTTCTTCCTTCCTTCATGCTCGCGGGTTGGAAACCATAGTCGATTGGCCAACAAGGATGAAGATAGCAACTGGAATCACACAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGATGATCAGACCAATGCTCGTATTACAGATCTTGGGATTCCTAAGCTCATGACTTCAGCTGCAGCCACTAATGTAATTGCCACTGCAGGAACACAGGGCTACAATGCACCAGAGCTAACCAAAACCAAAAAACCCACAACAAAGACAGACGTTTACAGCCTTGGTGTCATAATATTGGAACTCTTGACAGGAAAATCTCCTGGAGAAGCTATGGATGGAATGGATTTACCCCAGTGGGTGGCTTCCATTGTAAAGGAGGAGTGGACTAATGAAGTGTTTGATTTGGAGCTCATGAAAGATACACCAAAATTTGGTGATGAACTGTTAAACACTTTAAAACTTGCCCTGCATTGTGTGGATCCCTCACCGGCAGCTCGTCCTGACATTCAGCAAATTCTCCTGCAACTAGGGAAATTAAGGCTTCTACGGTGA 2535 43.23 MGKGHNFFSEFQAHPFQFMQIPAPKTVDGCFKSPNKNRIWKIQQWKNCSSYLIALFFAHLLAFEFQPVTGQMWDGVAVTQGDFLALQAIKQELVDLKGVLHSWNGSNGACSGQWVGIKCVNGQVIAIQLPWKALAGRISDMIGQLRELRKLSLHDNVISGIIPRSLGYLRNLRGVYLFNNRFSGSIPSTIGNLPLLRTLDLSNNLLTGEIPSGLTNSTRLIRVNLSYNSLSGAIPSRFMQSFSLRILALEHNNISGTIPDSWGGSGNSTCPLGVLTLDHNVISGAIPASLSKLEWLQEISISENKISGAIPGEIGSLKKLRLLDLSNNAINGGLPSNFSNLSSLELLNVENNRLESQISGDIDRLQNLSVVKLGKNRFSGEIPASFGNISAISQLDLSENNFTGQIPTSLTRLLNLTSFNVSYNKLSGPVPILLSNKFNASSFVGNLQICGFSSSTTCLPASSPQNNTTPSIEIPKPHQHSKLSVKDIILIAAGALLVLLFILCSIMLCCLLSKRSVAKKNDNTTSKRVVARSAEKAAPSSTQVGAGEAGGKLVHFDGQFVFTADDLLCSTAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFESEVAGLGKIRHPNLIALRAYYIGPKGEKLLVFDYMPRGSLSSFLHARGLETIVDWPTRMKIATGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARITDLGIPKLMTSAAATNVIATAGTQGYNAPELTKTKKPTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTPKFGDELLNTLKLALHCVDPSPAARPDIQQILLQLGKLRLLR 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21586953 21589655 + Sed0012179.1 Sed04g1121 709724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1121 844 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
Sed04g1121 844 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Sed04g1121 844 Pfam Leucine Rich Repeat 196 216 IPR001611 GO:0005515(InterPro)
Sed04g1121 844 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Sed04g1121 844 Pfam Leucine Rich Repeat 243 263 IPR001611 GO:0005515(InterPro)
Sed04g1121 844 SUPERFAMILY L domain-like 109 454 - -
Sed04g1121 844 Gene3D Ribonuclease Inhibitor 240 333 IPR032675 -
Sed04g1121 844 Gene3D Ribonuclease Inhibitor 81 239 IPR032675 -
Sed04g1121 844 Pfam Leucine rich repeat 274 330 IPR001611 GO:0005515(InterPro)
Sed04g1121 844 FunFam Leucine-rich repeat receptor-like protein kinase 554 645 - -
Sed04g1121 844 CDD STKc_IRAK 575 833 - -
Sed04g1121 844 SUPERFAMILY Protein kinase-like (PK-like) 572 837 IPR011009 -
Sed04g1121 844 Gene3D Ribonuclease Inhibitor 334 459 IPR032675 -
Sed04g1121 844 Gene3D Transferase(Phosphotransferase) domain 1 647 842 - -
Sed04g1121 844 PRINTS Leucine-rich repeat signature 196 209 - -
Sed04g1121 844 PRINTS Leucine-rich repeat signature 317 330 - -
Sed04g1121 844 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 244 462 - -
Sed04g1121 844 FunFam Nuclear pore complex protein NUP107 79 225 - -
Sed04g1121 844 Pfam Protein tyrosine and serine/threonine kinase 572 836 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1121 844 SMART LRR_typ_2 317 340 IPR003591 -
Sed04g1121 844 SMART LRR_typ_2 341 365 IPR003591 -
Sed04g1121 844 SMART LRR_typ_2 145 168 IPR003591 -
Sed04g1121 844 SMART LRR_typ_2 193 217 IPR003591 -
Sed04g1121 844 FunFam Pollen receptor-like kinase 1 646 843 - -
Sed04g1121 844 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 279 841 IPR052451 -
Sed04g1121 844 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Sed04g1121 844 ProSiteProfiles Protein kinase domain profile. 569 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1121 844 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0362 Sed-Chr4:2632695 Sed04g1121 Sed-Chr4:21586953 4.20E-152 dispersed
Sed04g1121 Sed-Chr4:21586953 Sed04g2935 Sed-Chr4:40926212 1.00E-142 dispersed
Sed02g0186 Sed-Chr2:33432404 Sed04g1121 Sed-Chr4:21586953 1.40E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78984 PF00069 Pkinase 9.70E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1121 - - - 0.0