Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1155 ATGCTCATGGAAGGCCACAACCCTCATCATCCCCTTGTTCAGCTCCACCTACAGCAGCAACAGCTTCAACATCAGCCACCGCATCTCCACCATAGCCTTGGCGTCGCCGCCGATCAAACAGCCGCCGCCACCGACAGATTTCCTCAATGGAGTATTCAGGAAACGAAGGAGTTTTTGATGATCAGAGCGGAGCTGGACCAGAATTTCATGGAGACCAAAAGAAACAAACTCTTGTGGGAATTTACTGCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCCCTGATCAGTGTAAATGCAAATGGAAAAACCTCGTTACCCGTTATAAGGGATGTGAAACGATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTTTACACAGAGCTACAAGCGATTTTCGGGGCAAGAATGCAAAGGATACTATTGGCAGAGGCGGAGAGCGGGGGGAGTGGATCGAAGAAGAAGGCAATGGCAATATCGTCCGACGAAGACGAAGAAAACGAGGACAGCGACGGGGGCGGCGGCGACACGAAAGTTGGCAATAAGAAGAGGAAGAAGGGTAAAGGGAGTGTCAGTGCGAGTGCGGGGGGAGGGAGCAGTAGTAGCATAGATCATTTGAAAGAAATATTGGAAGATTTTATGAATCAACAAATGCAAATGGAGAATCAATGGAGGGAGGCATTTGAAGCAAGGGAAAAAGAGAGGCTAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTAGAACATGAGAGGATAGTGTTGGAAAGAGGATGGAGAGAAAGAGAAGAACAAAGGAGAATGAGAGAGGAAGTTAGGGCTGAAAAAAGAGATGCTTTAATCACAACTTTGTTAAACAAGCTAAGAAGAGATGATTATAGGTAG 891 46.46 MLMEGHNPHHPLVQLHLQQQQLQHQPPHLHHSLGVAADQTAAATDRFPQWSIQETKEFLMIRAELDQNFMETKRNKLLWEFTASKMKEKGFNRSPDQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMQRILLAEAESGGSGSKKKAMAISSDEDEENEDSDGGGGDTKVGNKKRKKGKGSVSASAGGGSSSSIDHLKEILEDFMNQQMQMENQWREAFEAREKERLMREMEWRRNMEALEHERIVLERGWREREEQRRMREEVRAEKRDALITTLLNKLRRDDYR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23598843 23600620 + Sed0020330.1 Sed04g1155 709758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1155 296 ProSiteProfiles Myb-like domain profile. 50 106 IPR001005 -
Sed04g1155 296 PANTHER FI21293P1 24 292 - -
Sed04g1155 296 CDD GT1 48 113 - -
Sed04g1155 296 Pfam Myb/SANT-like DNA-binding domain 49 133 IPR044822 -
Sed04g1155 296 MobiDBLite consensus disorder prediction 147 204 - -
Sed04g1155 296 Gene3D - 50 111 - -
Sed04g1155 296 Coils Coil 204 224 - -
Sed04g1155 296 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1155 Sed-Chr4:23598843 Sed13g0759 Sed-Chr13:5409255 2.10E-21 dispersed
Sed03g2503 Sed-Chr3:32263902 Sed04g1155 Sed-Chr4:23598843 1.00E-40 transposed
Sed02g0213 Sed-Chr2:34689560 Sed04g1155 Sed-Chr4:23598843 3.90E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38100 PF13837 Myb_DNA-bind_4 1.20E-18 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1155 - - - 0.0