Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g1211 | ATGGCGCCACCGGAAGTTTCCGAGCCCGACATTGATTTGGAGCAGGGGAATCATCGGCGGTCTGTTAGTGGCAGTGAGTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCTTGTTATTCTCAGTTTTATTCGACCAATGGTGGTTCTTACGATGAGTATAGATTTGCTTTTGTTTCTCAGCCGGATTTAGGGGTTGTTTCGGATTCTCGGCGGGTTTCTTCGGCTTCGGATCGTTCTGTGGAGGTTGAAATTGAACATGGGATTACTGAAATCAAGGTGCATTTAGCTAAAGTTGAGAGGGATTGCAGGATTTGTCATTTGGGTCTGGAGAGTAATAGTCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGAAATAAGATATGTGAGATATGTCATTCTGTTGCACGAAACATTCTCGGACCAAATGAGGTTGAGTCAACGGATCAATCTAACGAATCGAATAATGCCACCTCGACAACTGCAGTTGCTGCATCAATTCCTTCATCAGAGAGCCCAAGCTTCTGGCGTGGACACCGGTTTCTGAATTTTCTCCTCGCTTGTATGGTATTTGCGTTTGTTATATCTTGGCTCTTCCACTTCAATGTGCCCTCCTCGTAA | 699 | 45.64 | MAPPEVSEPDIDLEQGNHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPDLGVVSDSRRVSSASDRSVEVEIEHGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKEDLAAAHKHCAETWFKIKGNKICEICHSVARNILGPNEVESTDQSNESNNATSTTAVAASIPSSESPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPSS | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 25097352 | 25100714 | + | Sed0019539.1 | Sed04g1211 | 709814 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g1211 | 232 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) | |
| Sed04g1211 | 232 | SUPERFAMILY | RING/U-box | 104 | 162 | - | - | |
| Sed04g1211 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 167 | IPR013083 | - | |
| Sed04g1211 | 232 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Sed04g1211 | 232 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Sed04g1211 | 232 | MobiDBLite | consensus disorder prediction | 170 | 198 | - | - | |
| Sed04g1211 | 232 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) | |
| Sed04g1211 | 232 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
| Sed04g1211 | 232 | PANTHER | ZINC FINGER, RING-CH-TYPE | 36 | 230 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0408 | Sed-Chr3:2457552 | Sed04g1211 | Sed-Chr4:25097352 | 1.20E-42 | dispersed | |
| Sed04g1211 | Sed-Chr4:25097352 | Sed13g1442 | Sed-Chr13:19628260 | 5.20E-36 | dispersed | |
| Sed11g2183 | Sed-Chr11:35549506 | Sed04g1211 | Sed-Chr4:25097352 | 3.60E-60 | wgd | |
| Sed02g0773 | Sed-Chr2:45443921 | Sed04g1211 | Sed-Chr4:25097352 | 2.30E-105 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g1211 | - | - | - | 0.0 |