Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1211 ATGGCGCCACCGGAAGTTTCCGAGCCCGACATTGATTTGGAGCAGGGGAATCATCGGCGGTCTGTTAGTGGCAGTGAGTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCTTGTTATTCTCAGTTTTATTCGACCAATGGTGGTTCTTACGATGAGTATAGATTTGCTTTTGTTTCTCAGCCGGATTTAGGGGTTGTTTCGGATTCTCGGCGGGTTTCTTCGGCTTCGGATCGTTCTGTGGAGGTTGAAATTGAACATGGGATTACTGAAATCAAGGTGCATTTAGCTAAAGTTGAGAGGGATTGCAGGATTTGTCATTTGGGTCTGGAGAGTAATAGTCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGAAATAAGATATGTGAGATATGTCATTCTGTTGCACGAAACATTCTCGGACCAAATGAGGTTGAGTCAACGGATCAATCTAACGAATCGAATAATGCCACCTCGACAACTGCAGTTGCTGCATCAATTCCTTCATCAGAGAGCCCAAGCTTCTGGCGTGGACACCGGTTTCTGAATTTTCTCCTCGCTTGTATGGTATTTGCGTTTGTTATATCTTGGCTCTTCCACTTCAATGTGCCCTCCTCGTAA 699 45.64 MAPPEVSEPDIDLEQGNHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPDLGVVSDSRRVSSASDRSVEVEIEHGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKEDLAAAHKHCAETWFKIKGNKICEICHSVARNILGPNEVESTDQSNESNNATSTTAVAASIPSSESPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPSS 232
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 25097352 25100714 + Sed0019539.1 Sed04g1211 709814
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1211 232 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
Sed04g1211 232 SUPERFAMILY RING/U-box 104 162 - -
Sed04g1211 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 167 IPR013083 -
Sed04g1211 232 CDD RING_CH-C4HC3_MARCH 107 159 - -
Sed04g1211 232 MobiDBLite consensus disorder prediction 1 22 - -
Sed04g1211 232 MobiDBLite consensus disorder prediction 170 198 - -
Sed04g1211 232 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
Sed04g1211 232 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
Sed04g1211 232 PANTHER ZINC FINGER, RING-CH-TYPE 36 230 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0408 Sed-Chr3:2457552 Sed04g1211 Sed-Chr4:25097352 1.20E-42 dispersed
Sed04g1211 Sed-Chr4:25097352 Sed13g1442 Sed-Chr13:19628260 5.20E-36 dispersed
Sed11g2183 Sed-Chr11:35549506 Sed04g1211 Sed-Chr4:25097352 3.60E-60 wgd
Sed02g0773 Sed-Chr2:45443921 Sed04g1211 Sed-Chr4:25097352 2.30E-105 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1211 - - - 0.0