Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1226 ATGGGTGAATCCATGGAGCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAGAATCCGGACCGTTCATCTTTCCTCCCTTTCTATGACCCCTCCGACATTCTCTCCACCGCCGGCGCCGGCGCGAGTCCCCTGTTCTCCGCCCCACGTTTCCAATTCCACCACCCCTTTTTCGACCCGCAAATCCAACCGGCTCTCTTACCCGATCCCACCAGCCACCCTCTTCTCCTAAACCAGTGCTACGCCGCCGCCTTCAAGGCCGAGCCGCTTTCTTTATCGCTCTCCTCTCCGCCGTACCCCACCGGCTCCGGCTACGCTTCCGTTTTCAGAGGGTCGAGGTTTTTGAAGCCAGCTCAGCAGCTGTTGGAGGAGCTTTGTGATGTTGTTGGATTTCAAGGAATTGAATCCTCCTCTAATTCTGACTCTTTAGCTCACTCTCCAATTCTTGATCATTCCATTGTTTCTGCCGCCCACGTTCCTAATAAATCTACCCTTCTTTCCATGCTTGATGAGGTTTACATGAAGTATAAGCAATATTATCAACAAATTCAAGAAGTAATGACATCGTTCGAGTACACCTCCGGGCTTGGGAATGCAGCACCCTATGCCAACCAGGCTATAAAAGGCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTGGACCAACTTCAATTCAATAAAAAGAGTCATGGTGACTTCTGTCAAAGGTCTGTTCAGAGCCCGGTATTTATTGACCATCAGCCTGTTTGGCGTCCTCAACGTGGGCTTCCCGAACGAGCTGTGTCAGTTCTCCGTGCTTGGTTGTTCGAACATTTCTTGCATCCTTACCCTTCTGATACAGATAAGGTTATGTTGGCAAAACAGACCGGTCTGTCTCGTAGTCAGGTTTCCAATTGGTTCATCAATGCTAGAGTGAGGATTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACGAAGCAAACGCAGAAGAATTCACATAGAGAAGATCGAAATGCCATCAGGACGAACGACCATCATACATCGAACTCACTCGCGATGGATAACCCGCTCACATCTAATCAACACATTCAAGATGCTCCTTCCAAATGCACCCTGAACGAATTTCACGGCATGCCAATGGGAAATCATCAAGACGAGTCTTTGAACGTATCTTACAACTTGTCGAGCCATCCCCATGTGGGTGCAAACACGAACATGGTGGGCAACAACGGTGGAGTCTCCTTAACTCTAGGTCTTCACCAGAACAATGGCATTGGGGGCTTTTCGGAACCCTTCCCAGTTGGATTACCCATTGCTGCCACTCGTCGTTTTGACCTCGGAATTCAAGCGAATAGTGACGGGTACATAATGGGTGGACATTTTGGTAGAGATGTGCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA 1425 48.77 MGESMEHVPQQSRRDKLRENPDRSSFLPFYDPSDILSTAGAGASPLFSAPRFQFHHPFFDPQIQPALLPDPTSHPLLLNQCYAAAFKAEPLSLSLSSPPYPTGSGYASVFRGSRFLKPAQQLLEELCDVVGFQGIESSSNSDSLAHSPILDHSIVSAAHVPNKSTLLSMLDEVYMKYKQYYQQIQEVMTSFEYTSGLGNAAPYANQAIKGMYKHFKCLKNAILDQLQFNKKSHGDFCQRSVQSPVFIDHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPSDTDKVMLAKQTGLSRSQVSNWFINARVRIWKPMVEEIYMLETKQTQKNSHREDRNAIRTNDHHTSNSLAMDNPLTSNQHIQDAPSKCTLNEFHGMPMGNHQDESLNVSYNLSSHPHVGANTNMVGNNGGVSLTLGLHQNNGIGGFSEPFPVGLPIAATRRFDLGIQANSDGYIMGGHFGRDVLGGQLLHDFVG 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25799266 25803103 + Sed0016279.1 Sed04g1226 709829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1226 474 SMART prehox3 104 224 IPR006563 -
Sed04g1226 474 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677(InterPro)
Sed04g1226 474 CDD homeodomain 253 314 IPR001356 GO:0003677(InterPro)
Sed04g1226 474 MobiDBLite consensus disorder prediction 1 22 - -
Sed04g1226 474 Gene3D - 256 318 - -
Sed04g1226 474 FunFam BEL1-like homeodomain protein 9 256 318 - -
Sed04g1226 474 SMART HOX_1 253 317 IPR001356 GO:0003677(InterPro)
Sed04g1226 474 MobiDBLite consensus disorder prediction 1 23 - -
Sed04g1226 474 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1226 474 SUPERFAMILY Homeodomain-like 255 320 IPR009057 -
Sed04g1226 474 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 341 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed04g1226 474 Pfam Associated with HOX 110 222 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1226 Sed-Chr4:25799266 Sed14g0506 Sed-Chr14:5016049 2.00E-90 dispersed
Sed02g0764 Sed-Chr2:45347735 Sed04g1226 Sed-Chr4:25799266 3.00E-203 wgd
Sed03g2320 Sed-Chr3:18239033 Sed04g1226 Sed-Chr4:25799266 3.20E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38102 PF07526 POX 7.00E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1226 - - - 0.0