Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1243 ATGGCTCAACTCTGCTTCCTCTGCTTCTTCTTCATCTTCTTCCCCAGCCCCGCCGCATCTCAGCCGCTCTACTTCGCCGGATTCCAAGGCGCCGCCGCCTCAACCAACTTAACCCTCACCGACATCGCCGAGATCCAGCCCAACGGAATCTTAAAGCTCACAAACGACACCAGCCGATTACAGGGCCACGCCTTCTACACTTCCCCTGTTCGCTTCAAAAACTCCTCCGCCGGAAAAGCCTACTCGTTCTCCGCCGCCTTTGCCATCGCCGTCGTGCCGGAGTACCCGACCCTCGGCGGCCACGGCCTCGCCTTCACCATCGCACCCTCCAAAAACCTCCGCGGACTTCCTAGCCAGTACTTAGGCCTTCTCAATGCCACCGACGTCGGAAACTTCTCCAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTCGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAGTATGGTCTCTAACGCCTCCACCACCGCTTCCTATTTCGCGGACGACGGACCCATTAAACGAAACCTAACCCTTAAAAGTGGGAGCCCGATTCAAGCTTGGATCGATTACGATTCCTCTGTAAACACCGTCACGGTGGCGCTTTCTCCGTTTTCCACCAAACCCAAGATCCCGATTCTGTCATTTCATGTAGATTTGTCTCCGATTCTTCACGAGTTCATGTACGTTGGATTCTCGGCCTCGACCGGGCTTCTTGCGAGTTCTCACTACGTGTTGGGATGGAGTTTTAGTATGAACGGACCGGCCCTGTCTTTAGATCTGTCTTCTCTGCCCTCTGTTCCCGGTCCGAAGAGGAATCGAACCGGTTTCACAATTGGGGTTTCTGTTGCGGCTGTTTTGATTGTCTTAATTGCGATTTCTGTTGCTGTTTTCATCATTTGGAAGATTAAAACCGCCGATTTCACCGAAGCTTGGGAGCTTGAAATTGGGCCTCATCGGTACTCTTACAAGGAGCTAAAGCAAGCGACGAAGCGATTTAGGGATAAGGATCTTCTTGGGCGGGGTGGATTTGGGAAGGTTTATAAAGGGGTTTTGCCCAATTCGAAAACCCATGTTGCAGTTAAGCGAATTTCTCATGAATCGAAACAGGGTTTGAGGGAATTTGTGTCGGAGATTGCTAGTATTGGCCGGCTCCGTCACCGGAACTTGGTTCAGTTGCTAGGATGGTGCCGCCGCCGTGGGGATTTGCTTCTTGTTTATGAGTTCATGGCCAATGGTAGCTTGGATAACTACATTTTCGACGATACGGATGTGATTCTTAGTTGGGATCAGAGGTTTCGGATCATAAAGGGCGTCGCCTCCGGCCTTCTCTACTTGCATGAAGGCTACAAACAGGTGGTTATTCATAGAGATATAAAGGCCAGCAATGTTCTGCTGGACAGTGAAATGAATGGGAAGCTCGGCGATTTCGGTCTTGCTAGACTATACGAGCACGGGACGAATCCGAGCACGACTCGGGTCGTCGGGACACTGGGATATCTAGCTCCGGAGCTACCCAGAACAGGGAAATCCACCACAAGTTCAGATGTATATGCATTGGGTGCATTACTGCTGGAAGTGGCCTGTGGGCGGCGGCCGATCGACCCAAAAGTGTCTACGGAGGAGCTGGTGCTGGTGGATTGGGTGTGGGAGAAGTACAGGGAAGGGAAATTGGTGGAAGTGATGGATCCAAAATTGAACGGGGATTACAATGTGGTTGAAGCAGTGATGATTTTGAAATTGGGGTTGTTCTGTTCGAACAATTCGGCCACGGCGCGGCCGAGTATGAGGCAGGTGGTGCGGCTTTTGGATGGGGAGATTGAAGTTCCCGACGAGATCGCGCCTCCAAAAGTGGTGGAGGGAGGGAAGAACAGTGAAGGGTTTGATGAATTTGTGAATTCATTTGCTTGTTCTTCTTCGTTTAACAAGTTTAGCACCAATTCATTGACAGGAAATAGGGATATGGATTTGAGTTTTTCCACTACTCCGCTTTCGCTTCTCAATGGCAGAGATTGA 2040 50.93 MAQLCFLCFFFIFFPSPAASQPLYFAGFQGAAASTNLTLTDIAEIQPNGILKLTNDTSRLQGHAFYTSPVRFKNSSAGKAYSFSAAFAIAVVPEYPTLGGHGLAFTIAPSKNLRGLPSQYLGLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGINLNSMVSNASTTASYFADDGPIKRNLTLKSGSPIQAWIDYDSSVNTVTVALSPFSTKPKIPILSFHVDLSPILHEFMYVGFSASTGLLASSHYVLGWSFSMNGPALSLDLSSLPSVPGPKRNRTGFTIGVSVAAVLIVLIAISVAVFIIWKIKTADFTEAWELEIGPHRYSYKELKQATKRFRDKDLLGRGGFGKVYKGVLPNSKTHVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYEFMANGSLDNYIFDDTDVILSWDQRFRIIKGVASGLLYLHEGYKQVVIHRDIKASNVLLDSEMNGKLGDFGLARLYEHGTNPSTTRVVGTLGYLAPELPRTGKSTTSSDVYALGALLLEVACGRRPIDPKVSTEELVLVDWVWEKYREGKLVEVMDPKLNGDYNVVEAVMILKLGLFCSNNSATARPSMRQVVRLLDGEIEVPDEIAPPKVVEGGKNSEGFDEFVNSFACSSSFNKFSTNSLTGNRDMDLSFSTTPLSLLNGRD 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26168213 26170906 + Sed0019812.1 Sed04g1243 709846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1243 679 FunFam L-type lectin-domain containing receptor kinase S.4 19 266 - -
Sed04g1243 679 Pfam Protein kinase domain 342 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1243 679 SUPERFAMILY Protein kinase-like (PK-like) 323 626 IPR011009 -
Sed04g1243 679 Gene3D - 23 261 - -
Sed04g1243 679 SMART serkin_6 341 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1243 679 PANTHER - 38 630 IPR050528 GO:0005886(PANTHER)
Sed04g1243 679 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Sed04g1243 679 CDD lectin_legume_LecRK_Arcelin_ConA 25 262 IPR001220 GO:0030246(InterPro)
Sed04g1243 679 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Sed04g1243 679 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Sed04g1243 679 ProSiteProfiles Protein kinase domain profile. 341 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1243 679 Pfam Legume lectin domain 25 272 IPR001220 GO:0030246(InterPro)
Sed04g1243 679 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524(InterPro)
Sed04g1243 679 CDD STKc_IRAK 347 613 - -
Sed04g1243 679 FunFam L-type lectin-domain containing receptor kinase S.4 418 623 - -
Sed04g1243 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1243 679 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 278 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0668 Sed-Chr2:44514857 Sed04g1243 Sed-Chr4:26168213 0.00E+00 dispersed
Sed04g1243 Sed-Chr4:26168213 Sed14g0524 Sed-Chr14:5196773 1.10E-179 dispersed
Sed04g1242 Sed-Chr4:26107696 Sed04g1243 Sed-Chr4:26168213 8.90E-74 tandem
Sed04g1243 Sed-Chr4:26168213 Sed04g1244 Sed-Chr4:26202791 1.60E-194 tandem
Sed03g2298 Sed-Chr3:17691314 Sed04g1243 Sed-Chr4:26168213 4.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78998 PF00069 Pkinase 1.00E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1243 - - - 0.0