Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1244 ATGGTGCTCATGTTCTGTTCGACTAAAGAGATGAACAAAACCATGTTTTTCAAGCTCGCAGTCATGGCGTCTCTGCTTGTGCACTCAGTCTCAGCTGCTTCTGAAGGTACCAATTTCATCTTCAATGGGTTCCAATCTGCAAATCTTTCACTTGACGGCGTGGCTGTTGTCACTCCAAATGGCCTCTTGAAACTGACCAACGAGACCAGGCAAAACAGTGGCCATGCCTTTTATTCTCATCAAGTAAATTTTGTCAATTCCTCTTACGGCGTCTCCTCTTTCTCCACCACTTTTGTCTTTGCCATTATCTCTGAATACCCGAAACTCAGTGGCCATGGAATCGCCTTCGCGGTGTCTCCGACGAAAGGTTTCCCTGGAGCTAATCCAAGCCAGTATCTTGGCCTTTTCAATGAGAGTAACAATGGTAACGCAACCAACCATGTATTTGCGGTGGAGCTCGACACGATTCAGAGTAAAGAGTTTAATGATGCTGATGACAATCATGTCGGTATAGACATAAATGGGTTGAAATCTGAGGAAGCTAAAACAGCTGGGTTTTATTCTGACAGTGATGGGAAACTCAGAAACCTGACTCTTATAAGTGGCCAACCAATGCAGGTTTGGATCGAATATGATGGTATCAACAAAGAAATCAATGTTACTTTGGCCCCGATTAACATTCCAAAACCCAAGACTCCACTTCTGTCTTACTCCAGAGACCTTTCATCAGTCATAAACAACAACTCCATGTTCCTTGGGTTTTCATCCTCCACTGGCTCGGTTTCAACGTCTCATTATGTTTTAGGTTGGAGTTTCAGGTTAAACGGGCAAGCTCAAAGTCTTGACATTTCCCGCCTTCCGAAGCTGCCTCGGAAAAAACAAGTATCCAAATTTTTAACAATTGGGTTGCCTTTAATTTCGGGAGGGATTGTTATCTTGGTGATTTTAGCCATTGTTTATGTTGTCAGAAGGAAGAGGAAGTTCGCCGAGCTGCTCGAAGACTGGGAGTTGGATTATGGCCCTCACAGGTTCAAATACAAAGATTTATACGTTGCCACGAATGGATTTAAAGAGAAAGAGCTTCTGGGTTCCGGCGGATTTGGACGAGTCTACAAAGGAGTATTACCAAAATCAAAACTTGTGATCGCTGTAAAGAGAGTTTCTCATGAATCAAGGCAGGGAATGAAGGAATTCGTGGCTGAGATTGTTAGTCTCGGGAGGCTTCGCCACAGAAACCTCGTGCAGCTTTTAGGCTACTGCAGACGCAAAGGAGAGCTGCTTTTGGTATACGATTACATGGAGAATGGAAGTTTGGATAAGTACCTGTTTGGCGAACCGAATCCAAGTCTGAATTGGAGCCAGAGATTTCAAATCATTAAAGGAGTGGCATCAGGGCTGCTGTACCTGCATGAAGAATGGGAGCAAGTTGTGATTCACAGAGATGTTAAAGCAAGTAATGTATTGCTAGACAGTGAGTTAAATGGAAGATTGGGAGATTTTGGGTTAGCACGACTATACGATCATGGAACAGACCCTCAAACCACACACATAGTTGGAACACTCGGATATTTAGCTCCCGAGCACACCAGATCGGGCAGGCCGACAACCCACATGGACGTGTTTGCTTTTGGGGCATTTCTGCTGGAGGTTGCAACTGGAAAGAGGCCAATAGAGATTCGGGGAATGACGGAAGATATAATATTGGTGGATTGGGTGTTTTTATGTTGGGCGAGAGGAGCCGTTGTGGAGGCCAGAGATCCAAAGTTGGGAACAGAGTATGTAGCAGAGGAGATAGAATTGGTGCTGAAACTTGGATTGTTGTGTTCTCAATCCAACCCATTAGCGAGGCCAAGCATGCGCCAAATGGTGCAGTACTTGGAAGGAGATGTTCCCATGCCGGAGATGACTTCTATCGATACTTCCCACGGTGGACGTGAAAGTTTTGATGATATTGTCATGTCCTATTCATCTCCCCTGGATAAGGCTTTTGCAACTTTCACACAATCTAGTTCTTCCTTCGAGGCTTTTGCCCATTCTTCTGATGCTCACTCTCTTCTATCTGGTGGCCGTTGA 2073 44.86 MVLMFCSTKEMNKTMFFKLAVMASLLVHSVSAASEGTNFIFNGFQSANLSLDGVAVVTPNGLLKLTNETRQNSGHAFYSHQVNFVNSSYGVSSFSTTFVFAIISEYPKLSGHGIAFAVSPTKGFPGANPSQYLGLFNESNNGNATNHVFAVELDTIQSKEFNDADDNHVGIDINGLKSEEAKTAGFYSDSDGKLRNLTLISGQPMQVWIEYDGINKEINVTLAPINIPKPKTPLLSYSRDLSSVINNNSMFLGFSSSTGSVSTSHYVLGWSFRLNGQAQSLDISRLPKLPRKKQVSKFLTIGLPLISGGIVILVILAIVYVVRRKRKFAELLEDWELDYGPHRFKYKDLYVATNGFKEKELLGSGGFGRVYKGVLPKSKLVIAVKRVSHESRQGMKEFVAEIVSLGRLRHRNLVQLLGYCRRKGELLLVYDYMENGSLDKYLFGEPNPSLNWSQRFQIIKGVASGLLYLHEEWEQVVIHRDVKASNVLLDSELNGRLGDFGLARLYDHGTDPQTTHIVGTLGYLAPEHTRSGRPTTHMDVFAFGAFLLEVATGKRPIEIRGMTEDIILVDWVFLCWARGAVVEARDPKLGTEYVAEEIELVLKLGLLCSQSNPLARPSMRQMVQYLEGDVPMPEMTSIDTSHGGRESFDDIVMSYSSPLDKAFATFTQSSSSFEAFAHSSDAHSLLSGGR 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26202791 26204863 + Sed0025016.1 Sed04g1244 709847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1244 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1244 690 PANTHER - 41 640 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Sed04g1244 690 Gene3D Transferase(Phosphotransferase) domain 1 433 642 - -
Sed04g1244 690 Gene3D - 35 287 - -
Sed04g1244 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 292 IPR013320 -
Sed04g1244 690 SUPERFAMILY Protein kinase-like (PK-like) 337 655 IPR011009 -
Sed04g1244 690 ProSiteProfiles Protein kinase domain profile. 356 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1244 690 CDD STKc_IRAK 362 628 - -
Sed04g1244 690 Gene3D Phosphorylase Kinase; domain 1 341 432 - -
Sed04g1244 690 FunFam Lectin-domain containing receptor kinase A4.3 341 432 - -
Sed04g1244 690 Pfam Protein kinase domain 356 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1244 690 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524(InterPro)
Sed04g1244 690 FunFam L-type lectin-domain containing receptor kinase S.4 433 639 - -
Sed04g1244 690 SMART serkin_6 356 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1244 690 FunFam L-type lectin-domain containing receptor kinase V.9 36 279 - -
Sed04g1244 690 Pfam Legume lectin domain 37 287 IPR001220 GO:0030246(InterPro)
Sed04g1244 690 CDD lectin_legume_LecRK_Arcelin_ConA 37 276 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2296 Sed-Chr3:17633493 Sed04g1244 Sed-Chr4:26202791 4.20E-219 dispersed
Sed04g1242 Sed-Chr4:26107696 Sed04g1244 Sed-Chr4:26202791 5.10E-53 dispersed
Sed04g1244 Sed-Chr4:26202791 Sed14g0524 Sed-Chr14:5196773 1.50E-229 dispersed
Sed04g1243 Sed-Chr4:26168213 Sed04g1244 Sed-Chr4:26202791 1.60E-194 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78999 PF00069 Pkinase 5.40E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1244 - - - 0.0