Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1258 ATGGATCCACGCCTGCACGCTGGTTCCATGAATGGGATTCTTTTAGGTAATGGGTCTTTTGTGGTTCAATCTCAAGATAACTCTCTTGGAAGGTCTAGATTTCAGAATACCATTTTGACTCATAACTTTCAACAATTTAATTGTCTTCCCTCCAATCCATCACCCAGTATCATTGCCTCGAGTTCCAGTGTCGTCACCTCGTCTTCTAACCATGTGAGCCACGAGGAGGATTATCTGGAAGATTGCGATTTTTCTGATGCCGTTTTGAGTTTCATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAGGCTGCTGAGAAACCGTTCTATGAGGTTCTTGGTAAAAAGTATCCTCCTTCCCCCGAGCCTAATAAATCTCTGGCCAATCAATTCAGTGATAGTTTCAATGATGAACTTTGTGGTTACCTGAATGGTTACAATAACCCTTTTGAAATTCAGAGTGGAGATGTATTTCAAGTTAGAAGCACTTTAGGTGATACCATTTCTCCATCATCTAATAGCTCCTCAAATAGTATCATTAGTGGGGCTGATGGGTGGGTGGATTTCTCTAATCATACAATACGAATTCCTGAGCCTAACAACAGGAGCCAATCTATTTGGCAGTTTCATAAAGGGTTTGAAGAGGCTAGCAAATTCTTACCTGGTGGAAACAACTTGTGTCTTGATTTTGAGGTAAACAGATCTGAAACTCACGTGGGACCAAGCCATACATATGTGAAGGCAGAAAGAAAGGATCAGAGGAGTGCTTTGTCGCTTGAGTCACGAGTAAGAAAGAATCCTCATGATGAGGATGGTGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTGCAGAGTCAACCTTGCGATCTGAGATGTTTGATATTGTGTTGCTTCATAGCGCAGGGGAGGGGCATGAACGGTTAGCTTCATTTCGACAGGACTTACGAAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAGCTAAAAGAGATCAGTGGTGGGAGGGGTCGTCGGAAGAAGCAAAGCGGGAAAAAGGAGGTTGTAGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCCGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGAAGGTCAGGCAGCATGCTTCTCCATTTGGGGATGGAAATCAGAGACTGGCGAGTTGTTTTGCTGATGGTCTGGAGGCACGCTTGGCTGGTACTGGTAGCCAGATTTACAAAGGTTTAATCAATAAAAGAACACCTGCTGCTGATTTATTGAAAGCCTACCACCTGTATCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAAGACTATAATGATTGCAGCTGAGAACGCAACTAAGGTTCACGTCATAGATTTTGGTATTCTGTATGGTTTTCAGTGGCCTACTTTAATACAGAGAATATCGTGGAGAGAAGGAGGACCTCCAAAGCTTCGTATTACGGGAATAGAGTTTCCCCAGCCTGGCTTCCGTCCAGCAGAGAGAGTAGAGGAAACGGGTCGTCGCTTGGCAGCCTATGCAGAGACTTTTAATGTGCCATTTGAGTATAATGCTATCGCAAAAAAGTGGGAAACTATTACAGTCGAAGATCTCAATATCGAAGAGGATGAGTTCCTAGTTGTTAATTGTGTGTATCGAGCTAAAAATCTGTTTGACGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAAATTGGTACGCAAAATTAATCCTAACTTGTTCATTAGTGGCTTTGTCAATGGGGCATACAATGCTCCTTTCTTTGTTACCCGATTTCGAGAGGCTTTGTTCCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTTCGAGCGAATGCTGTTGGAGAGAGAGATCTTTGGCAGAGAGGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACGTACAAGCAATGGCAATTCCGGATCATGAGGGCTGGATTTGAGCAAATGCATTTTCAACCTGAGATTTTTGTGACAGCAGTTGACAAGGTGCGGACAAGTTACCACAAAGATTTCTTGATTGATGAAGATAGCAGATGGATACTTCTGGGATGGAAAGGTCGAATTATATATGCTATCTCTGCATGGAAACCTATTAATGAGTAA 2226 42.5 MDPRLHAGSMNGILLGNGSFVVQSQDNSLGRSRFQNTILTHNFQQFNCLPSNPSPSIIASSSSVVTSSSNHVSHEEDYLEDCDFSDAVLSFINQILMEEDMEDKTCMLQDSLDLQAAEKPFYEVLGKKYPPSPEPNKSLANQFSDSFNDELCGYLNGYNNPFEIQSGDVFQVRSTLGDTISPSSNSSSNSIISGADGWVDFSNHTIRIPEPNNRSQSIWQFHKGFEEASKFLPGGNNLCLDFEVNRSETHVGPSHTYVKAERKDQRSALSLESRVRKNPHDEDGDLEEERSSKQAAVFAESTLRSEMFDIVLLHSAGEGHERLASFRQDLRNAKIKSMLQSGQLKEISGGRGRRKKQSGKKEVVDLRTLLISCAQAVAADDHRNASELLKKVRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLINKRTPAADLLKAYHLYLAACPFRKISNFTSNKTIMIAAENATKVHVIDFGILYGFQWPTLIQRISWREGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAETFNVPFEYNAIAKKWETITVEDLNIEEDEFLVVNCVYRAKNLFDESVATESARNTVLKLVRKINPNLFISGFVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDFERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFEQMHFQPEIFVTAVDKVRTSYHKDFLIDEDSRWILLGWKGRIIYAISAWKPINE 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26450420 26454140 - Sed0015974.1 Sed04g1258 709861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1258 741 MobiDBLite consensus disorder prediction 255 292 - -
Sed04g1258 741 Pfam GRAS domain family 366 737 IPR005202 -
Sed04g1258 741 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 348 736 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed04g1258 741 MobiDBLite consensus disorder prediction 251 292 - -
Sed04g1258 741 ProSiteProfiles GRAS family profile. 357 737 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1103 Sed-Chr1:8281312 Sed04g1258 Sed-Chr4:26450420 7.20E-155 dispersed
Sed04g1258 Sed-Chr4:26450420 Sed04g1260 Sed-Chr4:26450420 0.00E+00 dispersed
Sed04g1258 Sed-Chr4:26450420 Sed04g1259 Sed-Chr4:26450420 0.00E+00 tandem
Sed04g0777 Sed-Chr4:6354137 Sed04g1258 Sed-Chr4:26450420 3.80E-15 transposed
Sed04g1258 Sed-Chr4:26450420 Sed05g2984 Sed-Chr5:40472508 9.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38104 PF03514 GRAS 8.10E-118 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1258 K27753 - csv:101205887 1191.79