Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1274 ATGAATTTTTCCTCCATTTCTTCTTATCTTGATCCTTCCAACTGGCAACAACAAGTCACCCATCAAGTGGGAAGTAATAGCAGCCCTGGAGTCACCCAGCTTCCTCCTCCGCCGCCTCCGCCTCCACCGCCACCCCGTGGCGTCGGTGGTAGTGGTTCGATCCGCCCTGGTTCGATGACCGAGCGAGCTCGGTTAGCTAATATTCCCATGCCCGAGGCTGCATTGAAATGTCCAAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAATTATAGCCTCACTCAGCCTCGCCACTTTTGCAAGGCTTGTAGAAGGTACTGGACAAGAGGTGGGGCCATGAGGAGCGTCCCGGTGGGAGGCGGGTGCCGGAGGAACAGAAGAAGCAAAGGGAGAAGTTCGAAATCGCCACCGGTCAGCTCAGACCGGCAACAATCGAGCGGTTCAGGCCATTCCTCATCGAGTGCAATAGCTTCCAACAACAGCGGAGGGCTTTCCCCACAGATCCCATCACTCCGGTTCATGGCTCCTCTTCACCAACAGCTTAGTGATTTCGACATCGGAGGCTTCAACTACGGCAGCGTAAGCCTCTCAGCTCCAGCCGCGGCTGCAGGAGACCCGAGCTTCCAATTGGGCAATACTAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGATCAACAATGGCGGCTCCAGCAACAAGCTCCCCAATTTCTCTTCTCGTCAAGCCTCGACCCTTTCGAGGGCAGTAGCGCAGATGGATCCGGGTGGCAAATGAGGCCAAAATTAGCATCAAGCACAAGGAATAATTTAACCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCATGATCATCAAGTTAATGTTGGAAGACAATATCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCTTGGTCAGATCTTTCAGGTTTCAGTTCTTCATCTTCAACAAGAAACCAATTATAG 993 50.76 MNFSSISSYLDPSNWQQQVTHQVGSNSSPGVTQLPPPPPPPPPPPRGVGGSGSIRPGSMTERARLANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGAMRSVPVGGGCRRNRRSKGRSSKSPPVSSDRQQSSGSGHSSSSAIASNNSGGLSPQIPSLRFMAPLHQQLSDFDIGGFNYGSVSLSAPAAAAGDPSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFLFSSSLDPFEGSSADGSGWQMRPKLASSTRNNLTQMGNSVKMEETPDHDHQVNVGRQYLGNEQYWSSGSMAWSDLSGFSSSSSTRNQL 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26722099 26723743 + Sed0026930.1 Sed04g1274 709877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1274 330 MobiDBLite consensus disorder prediction 134 164 - -
Sed04g1274 330 MobiDBLite consensus disorder prediction 1 58 - -
Sed04g1274 330 SUPERFAMILY Formin homology 2 domain (FH2 domain) 35 45 - -
Sed04g1274 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 209 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 MobiDBLite consensus disorder prediction 116 164 - -
Sed04g1274 330 MobiDBLite consensus disorder prediction 31 49 - -
Sed04g1274 330 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2759 Sed-Chr1:22714234 Sed04g1274 Sed-Chr4:26722099 2.00E-41 dispersed
Sed03g0078 Sed-Chr3:485327 Sed04g1274 Sed-Chr4:26722099 3.80E-48 dispersed
Sed03g2999 Sed-Chr3:46821264 Sed04g1274 Sed-Chr4:26722099 1.40E-37 dispersed
Sed04g1274 Sed-Chr4:26722099 Sed04g2829 Sed-Chr4:40196822 2.70E-46 dispersed
Sed04g1274 Sed-Chr4:26722099 Sed04g1275 Sed-Chr4:26722232 1.60E-136 tandem
Sed02g0688 Sed-Chr2:44720217 Sed04g1274 Sed-Chr4:26722099 2.10E-123 wgd
Sed03g2997 Sed-Chr3:46821264 Sed04g1274 Sed-Chr4:26722099 1.70E-38 wgd
Sed04g1274 Sed-Chr4:26722099 Sed05g2954 Sed-Chr5:40315474 6.00E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38111 PF02701 zf-Dof 3.60E-31 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1274 - - - 0.0