Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1274 ATGAATTTTTCCTCCATTTCTTCTTATCTTGATCCTTCCAACTGGCAACAACAAGTCACCCATCAAGTGGGAAGTAATAGCAGCCCTGGAGTCACCCAGCTTCCTCCTCCGCCGCCTCCGCCTCCACCGCCACCCCGTGGCGTCGGTGGTAGTGGTTCGATCCGCCCTGGTTCGATGACCGAGCGAGCTCGGTTAGCTAATATTCCCATGCCCGAGGCTGCATTGAAATGTCCAAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAATTATAGCCTCACTCAGCCTCGCCACTTTTGCAAGGCTTGTAGAAGGTACTGGACAAGAGGTGGGGCCATGAGGAGCGTCCCGGTGGGAGGCGGGTGCCGGAGGAACAGAAGAAGCAAAGGGAGAAGTTCGAAATCGCCACCGGTCAGCTCAGACCGGCAACAATCGAGCGGTTCAGGCCATTCCTCATCGAGTGCAATAGCTTCCAACAACAGCGGAGGGCTTTCCCCACAGATCCCATCACTCCGGTTCATGGCTCCTCTTCACCAACAGCTTAGTGATTTCGACATCGGAGGCTTCAACTACGGCAGCGTAAGCCTCTCAGCTCCAGCCGCGGCTGCAGGAGACCCGAGCTTCCAATTGGGCAATACTAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGATCAACAATGGCGGCTCCAGCAACAAGCTCCCCAATTTCTCTTCTCGTCAAGCCTCGACCCTTTCGAGGGCAGTAGCGCAGATGGATCCGGGTGGCAAATGAGGCCAAAATTAGCATCAAGCACAAGGAATAATTTAACCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCATGATCATCAAGTTAATGTTGGAAGACAATATCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCTTGGTCAGATCTTTCAGGTTTCAGTTCTTCATCTTCAACAAGAAACCAATTATAG 993 50.76 MNFSSISSYLDPSNWQQQVTHQVGSNSSPGVTQLPPPPPPPPPPPRGVGGSGSIRPGSMTERARLANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGAMRSVPVGGGCRRNRRSKGRSSKSPPVSSDRQQSSGSGHSSSSAIASNNSGGLSPQIPSLRFMAPLHQQLSDFDIGGFNYGSVSLSAPAAAAGDPSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFLFSSSLDPFEGSSADGSGWQMRPKLASSTRNNLTQMGNSVKMEETPDHDHQVNVGRQYLGNEQYWSSGSMAWSDLSGFSSSSSTRNQL 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26722099 26723743 + Sed0026930.1 Sed04g1274 709877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1274 330 MobiDBLite consensus disorder prediction 134 164 - -
Sed04g1274 330 MobiDBLite consensus disorder prediction 1 58 - -
Sed04g1274 330 SUPERFAMILY Formin homology 2 domain (FH2 domain) 35 45 - -
Sed04g1274 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 209 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g1274 330 MobiDBLite consensus disorder prediction 116 164 - -
Sed04g1274 330 MobiDBLite consensus disorder prediction 31 49 - -
Sed04g1274 330 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1274 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2759 Sed-Chr1:22714234 Sed04g1274 Sed-Chr4:26722099 2.00E-41 dispersed
Sed03g0078 Sed-Chr3:485327 Sed04g1274 Sed-Chr4:26722099 3.80E-48 dispersed
Sed03g2999 Sed-Chr3:46821264 Sed04g1274 Sed-Chr4:26722099 1.40E-37 dispersed
Sed04g1274 Sed-Chr4:26722099 Sed04g2829 Sed-Chr4:40196822 2.70E-46 dispersed
Sed04g1274 Sed-Chr4:26722099 Sed04g1275 Sed-Chr4:26722232 1.60E-136 tandem
Sed02g0688 Sed-Chr2:44720217 Sed04g1274 Sed-Chr4:26722099 2.10E-123 wgd
Sed03g2997 Sed-Chr3:46821264 Sed04g1274 Sed-Chr4:26722099 1.70E-38 wgd
Sed04g1274 Sed-Chr4:26722099 Sed05g2954 Sed-Chr5:40315474 6.00E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38111 PF02701 zf-Dof 3.60E-31 No_clan Sed TF