Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1278 ATGAAATATTACTTTGTAACGAGATTGGCAATCTTCCTTGTAATCTTAGCCAGCAATTTGGCATCATCGTCGCCGGTTCCAGTCGATAAGTCGCAACTAAACAAATGGTTTTCCGACAGTATCAAGCCGCTGGACGCTCGCACAGAGCTTGATAAAGCCGTGGTCGAGGCCGAGAAAGACGCGACCATGGTGAAAGTAAGGGCAGACGGGAGTGGAAATTTCAAGACGATAACGGAAGCCATAAACAGCGTTCCAGCCAACAACAAAAAACGCGTACTCATTTGGATTGGAGGAGGAGTTTACAAAGAGAAGCTTAAGATTGAAATAAATAAACCATTCATTACTTTTTATGGATCTCCTAACGATATGCCAACTTTGACTTTTGATGGTGATTCCAAAACTTTCGGAACCGTTGACAGCGGCACTTTGACTGTCGAATCTGATTATTTTGTTGCTGCCAATATCATCCTTAAGAATTCATCCCCAAGGCCAAACAAAGAGGGAGGAGGACCGGCATTAGCGGCAAGAATAATGGGAAACAAAGCCGCAATTTACAATTGCAAATTCTATGGGTTTCAAGACACCCTTTGCGACGACGCCGGCATGCATCTTTACAAAGATTGCTTCATTCAAGGCACCACAGACTTCATTTTTGGGAGAGGAACCTCCCTTTATTTGAACTGTCAATTGGATGTGGTGAAAGAGGGTTCGGTGATCGCAGCACATTCGAGAGAGCTTGAACATGACGGAAGCGGCTACTCGTTTGTGCATTGCACCATTACCGGACCGGATACGAAGAGAATTTATTTGGGAAGAGCTTGGAGGCCTAGGTCTAGAGTTGTATACTCCTACACCAAAATGGCAGACAATGTTCACCCTGAAGGCTGGCACGACATGGGAAATCCCAAATACACTTCCTCGATTTTGTTCGGAGAATACAAGTGTTCAGGGCCGGGATCACAAACGGATCAGCGCGTATCCTACAGTAAACGATTGAGTGACGCAGAAGCGAAGCCATACCTTAGCCTTAATTACATAGAGGCTGCCAAATGGTTGCTTCCTCCTCCCAGCCTAAAGGCTTAA 1083 45.34 MKYYFVTRLAIFLVILASNLASSSPVPVDKSQLNKWFSDSIKPLDARTELDKAVVEAEKDATMVKVRADGSGNFKTITEAINSVPANNKKRVLIWIGGGVYKEKLKIEINKPFITFYGSPNDMPTLTFDGDSKTFGTVDSGTLTVESDYFVAANIILKNSSPRPNKEGGGPALAARIMGNKAAIYNCKFYGFQDTLCDDAGMHLYKDCFIQGTTDFIFGRGTSLYLNCQLDVVKEGSVIAAHSRELEHDGSGYSFVHCTITGPDTKRIYLGRAWRPRSRVVYSYTKMADNVHPEGWHDMGNPKYTSSILFGEYKCSGPGSQTDQRVSYSKRLSDAEAKPYLSLNYIEAAKWLLPPPSLKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26862333 26864103 + Sed0022128.1 Sed04g1278 709881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1278 360 Gene3D - 58 354 IPR012334 -
Sed04g1278 360 Pfam Pectinesterase 64 347 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g1278 360 SUPERFAMILY Pectin lyase-like 62 352 IPR011050 -
Sed04g1278 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 26 352 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed04g1278 360 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Sed04g1278 360 FunFam Pectinesterase 59 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1276 Sed-Chr4:26806875 Sed04g1278 Sed-Chr4:26862333 1.50E-196 dispersed
Sed04g1278 Sed-Chr4:26862333 Sed05g1198 Sed-Chr5:18662566 6.30E-150 dispersed
Sed04g1277 Sed-Chr4:26828504 Sed04g1278 Sed-Chr4:26862333 6.90E-213 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1278 K01051 - csv:101205095 472.626