Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1287 ATGGACGAAGAAGAAGCAGCTGGTTTGGCTGCAGTTACGAGTGAGCCGCTCGGGAAAGATAGCACTTTGAATACTGAATTGAAGCGAGACAATCAGTGTCTTGATGAAGATACCAAACCCGAGTTGTTTCACAACAAGAAGCAGGCGTATGAAGTGTCGTATGAAGAAGTTCGTTCGGAAGTTTCGAATCCTGTAATTTCTCCAAAAGTGAAGCATTTCCAAGATTTTACTAGCCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGTGCCCGGGGACCTTGCATCAGTTTGTTTGGGAAGTTCAAACTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAACAGCACGTCTCAAAATGACACTGATATGTGTGATGTTGATGATGTCTCTCGGTATGTGATTGAAATTCCTAAGCAAATTCGTCCAACCGGAACTAGGAAACTTACGATCAAACTCAGCAACAAAAAGGACAACAATGGCACATCCATGTCAGCTGGCAAAGTTCATTCTTACGACAAGGACTGTATACAGGAACCTTCTTCGGAGACATCTCAACATAGCTGGGAAGGCAGTGCTGAGAACAGCAGGTTTCCTTCAGGCTCTGGAAAGGTGAAAAAGGTTTTGCCAAACAATTATCCGTCAAATGTGAAAAAACTTCTGTCGACTGGTATACTTGACGGAGCTAGAGTCCAGTATATATCTACGGCAAGTGAGATAAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGTGGATGTTCAAGATGTGATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTCCAAGACTAGGCATCCTAATAATCATATATATCTGGAGAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAATGCACCTCTTAGCACAATAGATGAAGTGATTAAGGAACTGGCGGGTTCATCTGTTAACCTTGCTTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGAATTAGTGGAAGATGCTGATATGAAGCTTCCTAAATTCTCACATTCCATTGAGAGACCAAACCCTGTTTTATCCAACCCAGTCATGCAACAAAAGCGAACTACGGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGTCTGAGCTGGGTTACTTCGTCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGGGAGGTTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTATCGTCAGATTTATACTACAAATGGACTTACACTTCATGATATTTCCATCTCCCTGGCTAGTGGCCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCCATATGTGGTAATGGAGGGGATTTGATTTCCTGTGATCGCTGTCCTCAAGCTTTCCATACAGGGTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGCGTTGCCCAAACTGTAGCGACAAAGTGAGTTCCAGTTTGAAGGCTGCTTCTGGAGGTTCTTTGAGTTTTCCTAAACCAATCGTATTTAGGTTGACACGAGTTGTTAAAGCACCCGAGTATATAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGTTGACGACTTTGATGATCAAACTATACTATTATGCGATCAATGTGAAAGAGAATTCCATGTGGGTTGTTTGCGGAATAGTGGATTATGTGATCTGAAGGAACTCCCTAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCACATGGCCCTTCGGAATACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTTATAATTAGAAAGCATGTTGGAAACGGATTTTTAGTTGATGAAGGTCTTAAGGAAGTTCGGTGGCAAATTTTAAGTGGAAAAGATCGCTACCCGGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGCTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGAACAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGGTCAAAAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAATATCAGGGCATGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTAGTACTCCCTGCAGCAGAGGATGCCGAATCAATTTGGACCAACAAAATGGGGTTCAGAAAGATGAGTGAAGAACAATTGATCAAGTATATGAGGGAGGTCCAGCTAACGATCTTCAACGGAACATCAATGCTAGAGAAGGTGGTGCAGCGGTCGACATTATGA 2478 42.66 MDEEEAAGLAAVTSEPLGKDSTLNTELKRDNQCLDEDTKPELFHNKKQAYEVSYEEVRSEVSNPVISPKVKHFQDFTSQPDEQENTNQVVPGDLASVCLGSSNSEDISSDGVRCQNSTSQNDTDMCDVDDVSRYVIEIPKQIRPTGTRKLTIKLSNKKDNNGTSMSAGKVHSYDKDCIQEPSSETSQHSWEGSAENSRFPSGSGKVKKVLPNNYPSNVKKLLSTGILDGARVQYISTASEIKLNGIINGGGYMCGCSRCDFTTILSAYEFEQHAGSKTRHPNNHIYLENGRPIYSVIQEIKNAPLSTIDEVIKELAGSSVNLASFEAWKASFHQELVEDADMKLPKFSHSIERPNPVLSNPVMQQKRTTEKGTKRRDNDLHRLLFMPNGLPDGSELGYFVKGQKILGGYKQGNGILCSHCNREVSPSQFEAHAGMAARRQPYRQIYTTNGLTLHDISISLASGQKLTTGDSDDMCAICGNGGDLISCDRCPQAFHTGCLHLQNVPEGVWRCPNCSDKVSSSLKAASGGSLSFPKPIVFRLTRVVKAPEYIIGGCVVCRRHDFSVDDFDDQTILLCDQCEREFHVGCLRNSGLCDLKELPKDKWFCCDECSNIHMALRNTVLNGAQIIPDSLSDFIIRKHVGNGFLVDEGLKEVRWQILSGKDRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISEQEFGGMYCVVLIVRSKVVSAGLLRIFGREVAELPIVATSREYQGMGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKMGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQRSTL 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27072442 27080058 + Sed0019795.2 Sed04g1287 709890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1287 825 ProSiteProfiles Zinc finger PHD-type profile. 551 612 IPR019787 -
Sed04g1287 825 SMART PHD_3 474 515 IPR001965 -
Sed04g1287 825 SMART PHD_3 553 610 IPR001965 -
Sed04g1287 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 612 IPR013083 -
Sed04g1287 825 ProSitePatterns Zinc finger PHD-type signature. 475 514 IPR019786 -
Sed04g1287 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 531 IPR013083 -
Sed04g1287 825 FunFam PHD finger family protein 652 819 - -
Sed04g1287 825 SMART FANCL_C_2 471 523 - -
Sed04g1287 825 Pfam PHD-finger 475 514 IPR019787 -
Sed04g1287 825 ProSitePatterns Zinc finger PHD-type signature. 554 609 IPR019786 -
Sed04g1287 825 PANTHER AUTOIMMUNE REGULATOR 64 822 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed04g1287 825 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 709 797 IPR016181 -
Sed04g1287 825 Gene3D - 653 820 - -
Sed04g1287 825 ProSiteProfiles Zinc finger PHD-type profile. 472 517 IPR019787 -
Sed04g1287 825 MobiDBLite consensus disorder prediction 1 39 - -
Sed04g1287 825 Pfam Tify domain binding domain 408 456 IPR032308 -
Sed04g1287 825 Pfam Tify domain binding domain 245 299 IPR032308 -
Sed04g1287 825 MobiDBLite consensus disorder prediction 177 210 - -
Sed04g1287 825 SUPERFAMILY FYVE/PHD zinc finger 554 610 IPR011011 -
Sed04g1287 825 SUPERFAMILY FYVE/PHD zinc finger 470 518 IPR011011 -
Sed04g1287 825 MobiDBLite consensus disorder prediction 22 39 - -
Sed04g1287 825 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0694 Sed-Chr2:44809745 Sed04g1287 Sed-Chr4:27072442 0.00E+00 dispersed
Sed04g1287 Sed-Chr4:27072442 Sed05g1256 Sed-Chr5:22023656 1.50E-151 dispersed
Sed04g1286 Sed-Chr4:27072442 Sed04g1287 Sed-Chr4:27072442 0.00E+00 tandem
Sed04g1287 Sed-Chr4:27072442 Sed04g1288 Sed-Chr4:27072442 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38114 PF16135 TDBD 4.60E-13 No_clan Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1287 - - - 0.0