Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1288 ATGGACGAAGAAGAAGCAGCTGGTTTGGCTGCAGTTACGAGTGAGCCGCTCGGGAAAGATAGCACTTTGAATACTGAATTGAAGCGAGACAATCAGTGTCTTGATGAAGATACCAAACCCGAGTTGTTTCACAACAAGAAGCAGGCGTATGAAGTGTCGTATGAAGAAGTTCGTTCGGAAGTTTCGAATCCTGTAATTTCTCCAAAAGTGAAGCATTTCCAAGATTTTACTAGCCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGTGCCCGGGGACCTTGCATCAGTTTGTTTGGGAAGTTCAAACTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAACAGCACGTCTCAAAATGACACTGATATGTGTGATGTTGATGATGTCTCTCGGTATGTGATTGAAATTCCTAAGCAAATTCGTCCAACCGGAACTAGGAAACTTACGATCAAACTCAGCAACAAAAAGGACAACAATGGCACATCCATGTCAGCTGGCAAAGTTCATTCTTACGACAAGGACTGTATACAGGAACCTTCTTCGGAGACATCTCAACATAGCTGGGAAGGCAGTGCTGAGAACAGCAGGTTTCCTTCAGGCTCTGGAAAGGTGAAAAAGGTTTTGCCAAACAATTATCCGTCAAATGTGAAAAAACTTCTGTCGACTGGTATACTTGACGGAGCTAGAGTCCAGTATATATCTACGGCAAGTGAGATAAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGTGGATGTTCAAGATGTGATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTCCAAGACTAGGCATCCTAATAATCATATATATCTGGAGAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAATGCACCTCTTAGCACAATAGATGAAGTGATTAAGGAACTGGCGGGTTCATCTGTTAACCTTGCTTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGAATTAGTGGAAGATGCTGATATGAAGCTTCCTAAATTCTCACATTCCATTGAGAGACCAAACCCTGTTTTATCCAACCCAGTCATGCAACAAAAGCGAACTACGGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGTCTGAGCTGGGTTACTTCGTCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGGGAGGTTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTATCGTCAGATTTATACTACAAATGGACTTACACTTCATGATATTTCCATCTCCCTGGCTAGTGGCCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCCATATGTGGTAATGGAGGGGATTTGATTTCCTGTGATCGCTGTCCTCAAGCTTTCCATACAGGGTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGCGTTGCCCAAACTGTAGCGACAAAGTGAGTTCCAGTTTGAAGGCTGCTTCTGGAGGTTCTTTGAGTTTTCCTAAACCAATCGTATTTAGGTTGACACGAGTTGTTAAAGCACCCGAGTATATAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGTTGACGACTTTGATGATCAAACTATACTATTATGCGATCAATGTGAAAGAGAATTCCATGTGGGTTGTTTGCGGAATAGTGGATTATGTGATCTGAAGGAACTCCCTAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCACATGGCCCTTCGGAATACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTTATAATTAGAAAGCATGTTGGAAACGGATTTTTAGTTGATGAAGGTCTTAAGGAAGTTCGGTGGCAAATTTTAAGTGGAAAAGATCGCTACCCGGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGCTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGAACAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGGTCAAAAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAATATCAGGGCATGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTAGTACTCCCTGCAGCAGAGGATGCCGAATCAATTTGGACCAACAAAATGGGGTTCAGAAAGATGAGTGAAGAACAATTGATCAAGTATATGAGGGAGGTCCAGCTAACGATCTTCAACGGAACATCAATGCTAGAGAAGGTGGTGCAGCGGTCGACATTATGA 2478 42.66 MDEEEAAGLAAVTSEPLGKDSTLNTELKRDNQCLDEDTKPELFHNKKQAYEVSYEEVRSEVSNPVISPKVKHFQDFTSQPDEQENTNQVVPGDLASVCLGSSNSEDISSDGVRCQNSTSQNDTDMCDVDDVSRYVIEIPKQIRPTGTRKLTIKLSNKKDNNGTSMSAGKVHSYDKDCIQEPSSETSQHSWEGSAENSRFPSGSGKVKKVLPNNYPSNVKKLLSTGILDGARVQYISTASEIKLNGIINGGGYMCGCSRCDFTTILSAYEFEQHAGSKTRHPNNHIYLENGRPIYSVIQEIKNAPLSTIDEVIKELAGSSVNLASFEAWKASFHQELVEDADMKLPKFSHSIERPNPVLSNPVMQQKRTTEKGTKRRDNDLHRLLFMPNGLPDGSELGYFVKGQKILGGYKQGNGILCSHCNREVSPSQFEAHAGMAARRQPYRQIYTTNGLTLHDISISLASGQKLTTGDSDDMCAICGNGGDLISCDRCPQAFHTGCLHLQNVPEGVWRCPNCSDKVSSSLKAASGGSLSFPKPIVFRLTRVVKAPEYIIGGCVVCRRHDFSVDDFDDQTILLCDQCEREFHVGCLRNSGLCDLKELPKDKWFCCDECSNIHMALRNTVLNGAQIIPDSLSDFIIRKHVGNGFLVDEGLKEVRWQILSGKDRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISEQEFGGMYCVVLIVRSKVVSAGLLRIFGREVAELPIVATSREYQGMGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKMGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQRSTL 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27072442 27080058 + Sed0019795.3 Sed04g1288 709891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1288 825 ProSiteProfiles Zinc finger PHD-type profile. 551 612 IPR019787 -
Sed04g1288 825 SMART PHD_3 474 515 IPR001965 -
Sed04g1288 825 SMART PHD_3 553 610 IPR001965 -
Sed04g1288 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 612 IPR013083 -
Sed04g1288 825 ProSitePatterns Zinc finger PHD-type signature. 475 514 IPR019786 -
Sed04g1288 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 531 IPR013083 -
Sed04g1288 825 FunFam PHD finger family protein 652 819 - -
Sed04g1288 825 SMART FANCL_C_2 471 523 - -
Sed04g1288 825 Pfam PHD-finger 475 514 IPR019787 -
Sed04g1288 825 ProSitePatterns Zinc finger PHD-type signature. 554 609 IPR019786 -
Sed04g1288 825 PANTHER AUTOIMMUNE REGULATOR 64 822 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed04g1288 825 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 709 797 IPR016181 -
Sed04g1288 825 Gene3D - 653 820 - -
Sed04g1288 825 ProSiteProfiles Zinc finger PHD-type profile. 472 517 IPR019787 -
Sed04g1288 825 MobiDBLite consensus disorder prediction 1 39 - -
Sed04g1288 825 Pfam Tify domain binding domain 408 456 IPR032308 -
Sed04g1288 825 Pfam Tify domain binding domain 245 299 IPR032308 -
Sed04g1288 825 MobiDBLite consensus disorder prediction 177 210 - -
Sed04g1288 825 SUPERFAMILY FYVE/PHD zinc finger 554 610 IPR011011 -
Sed04g1288 825 SUPERFAMILY FYVE/PHD zinc finger 470 518 IPR011011 -
Sed04g1288 825 MobiDBLite consensus disorder prediction 22 39 - -
Sed04g1288 825 MobiDBLite consensus disorder prediction 179 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1288 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1286 Sed-Chr4:27072442 Sed04g1288 Sed-Chr4:27072442 0.00E+00 dispersed
Sed04g1288 Sed-Chr4:27072442 Sed05g1256 Sed-Chr5:22023656 1.50E-151 dispersed
Sed04g1287 Sed-Chr4:27072442 Sed04g1288 Sed-Chr4:27072442 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1413 . 26 689 PHD Transcription Factor Family AT2G36720 53.2 2.9e-200 696.8
Sed02g0694 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed02g0695 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed04g1286 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1287 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1288 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1413 . 228 685 PHD Transcription Factor Family AT3G53680 52.6 2.5e-136 484.2
Sed05g2940 . 313 451 PHD Transcription Factor Family AT3G53680 51.1 9.9e-37 153.3
Sed04g2818 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed04g2819 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed07g2464 . 435 563 PHD Transcription Factor Family AT3G53680 53.5 4.9e-36 151.0
Sed05g2941 . 313 448 PHD Transcription Factor Family AT3G53680 50.7 4.9e-36 151.0
Sed07g2462 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2463 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2465 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2466 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2467 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed12g1554 . 251 395 PHD Transcription Factor Family AT5G12400 52.3 1.2e-38 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38115 PF16135 TDBD 4.60E-13 No_clan Sed TR