Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1299 ATGCCGAGAAAAGGAATGAGGAGTCTACTTTTCCAGTTCTCGTCGCCGGCGAATTCCATTTCAAGGTATTCGATCTCGTCGCCGAGATCTTCGGCCTTATCAACTCCCCGGCGAACCTTCCACGACGCCATGATCGAACAGAGCATCGAATCCGCGGCCGCGATGATCATGAAATGGAATCCAGATTCTTCCTCCTACGCCAAAGTCACCTCCATGTTCTACGAAGATAAACGCGAAGCCTTCCAGTTCATCAAGCGCGTCAACGATCTTCAGAAATCGATGCATCTTATGGTTGCAGCGGAAGATTCCGGATCCGCTCCCGAACGCCTCGTTTACGCTCAAGGATTGATGGAAATCGCTATGAAGCGACTTCAGAAGGAGTTTTATCAGATTCTGTCCATGAATCGCGCTCATCTAGATCCGGAATCGGTTTCTACTCGTTCCTCTCGTTGCTCGACGAGATCTAGCACTTCCGTTGATTTCGATGAAGACGGAACCCTGGATGATGAAATTCAAGCCGTAGGGGACTCGATCTCGGAAGTGGAGGAGGTTTCGTTCACTGTAATGGAGGATTTGCGCGCCATTGCTGAGTGCATGATCTCCTCTGGCTATGCGAAAGAGTGCGTTAGTATGTATAAACTCATTCGAAAATCGATTATCGATGAAGGCGTGTATCGACTCGGACTTGAGAAATTTAGCCCTTCCAGAATCAACAAGATGGACTGGGAGATGCTTGATCTTAAAATCAAGACCTGGTTGGATGCGATTAAGCTCGCGATCAGAACGCTGTTCGTTGGCGAACGAATTCTCTGCGATCATGTGTTTTCCTCTTCTGAATCGATTGCGGAATCCTGTTTTGCAGATATTTCTAGAGAAGGCGCTTTGCTTCTCTTCGGATTTCCTGAACTTGTTGCTAAGAGTAAACAATCGCCGGAAAAAATGTTTCGTGTTCTTGATATGTACTCCTCGATCTCTGAAATTTGGCCGGATATCGAAGTGATTTTCTCCTCTGAATCTAATTCTGTTGTTCGATCTCAAGCTTTAACCTCACTCGCCAAACTCGGCGAATTAGTCCGCGCGATTGTGATGGATCTGGAGTTATCGATCCAGAAAAACTCGTCCAAATCGCCGGTCGCTGGCGGCGGCGTTCATTCATTGACGCTTCTCTCGATGAACTACCTAACTTTCCTCGCCGAATACGGCAACGTTTTGGCGGATATTTTCGCCGATTGGATCTCGCCGGAAAAAACCTCTCTAGATCAAATCTTCTTCAGCAGTTCAGAATCGGAATACTCTGCAGCAGCAGCAGCAACAACTTCGGCTATCTCCTTACGCATGGGATGGCTAATTCTAGTCCTGATCTGTAAACTCGACAGCAAAGCGAAACGCTACAAAGACGTCTCGTTATCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCCAAAGTCCGATCCTCGAATCTTCAGTACCTTCTCGGCGAGGAGTGGTTAGTGAAGCACGAGGCGAAGGTGAGGCAATTCGCCGCCAAGCACGAGGCGTTGGCTTGGGGAAGAGTCTTCAGTTCCTTGCCGGAGAATCCGACGGAGAGATTTTCACAGGTGGAGGCTAAGGAAATCTTCAGGAACTTCAATATGGCGTTTCAAGAAACTCACCGGAAACAGAAATCCTGTGTGATTCCTGACTCGAAGCTTCGTGATGAAGTTAAGATATCAGTTGCTAGAAAACTTTTGTCGTTTTATGGAGAATTTTACAGAGCGCAGAAAGCTTATGCCGGTGGTGGTGCAAAGCCGTATATCAGATTCTCGCCGGAAGATATTGGTAACTACCTTTCTGATCTCTATTTTGAGCCGTCCGATTGGGCCACCGATTCTACCTCGTCGCCGTCGTCCACTTCCTCCTCTCACCGGCGGGAATCGGTGTCTCGTTAA 1935 47.86 MPRKGMRSLLFQFSSPANSISRYSISSPRSSALSTPRRTFHDAMIEQSIESAAAMIMKWNPDSSSYAKVTSMFYEDKREAFQFIKRVNDLQKSMHLMVAAEDSGSAPERLVYAQGLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEDGTLDDEIQAVGDSISEVEEVSFTVMEDLRAIAECMISSGYAKECVSMYKLIRKSIIDEGVYRLGLEKFSPSRINKMDWEMLDLKIKTWLDAIKLAIRTLFVGERILCDHVFSSSESIAESCFADISREGALLLFGFPELVAKSKQSPEKMFRVLDMYSSISEIWPDIEVIFSSESNSVVRSQALTSLAKLGELVRAIVMDLELSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLAEYGNVLADIFADWISPEKTSLDQIFFSSSESEYSAAAAATTSAISLRMGWLILVLICKLDSKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGEEWLVKHEAKVRQFAAKHEALAWGRVFSSLPENPTERFSQVEAKEIFRNFNMAFQETHRKQKSCVIPDSKLRDEVKISVARKLLSFYGEFYRAQKAYAGGGAKPYIRFSPEDIGNYLSDLYFEPSDWATDSTSSPSSTSSSHRRESVSR 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27209667 27211935 + Sed0023086.1 Sed04g1299 709902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1299 644 Gene3D Exocyst complex component Exo70 65 622 - -
Sed04g1299 644 SUPERFAMILY Cullin repeat-like 56 616 IPR016159 -
Sed04g1299 644 FunFam Exocyst subunit Exo70 family protein 66 623 - -
Sed04g1299 644 Pfam Exocyst complex component Exo70 N-terminal 49 133 - -
Sed04g1299 644 Pfam Exo70 exocyst complex subunit C-terminal 250 614 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed04g1299 644 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 617 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed04g1299 644 MobiDBLite consensus disorder prediction 622 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1299 Sed-Chr4:27209667 Sed04g2787 Sed-Chr4:39935762 3.70E-132 dispersed
Sed01g0928 Sed-Chr1:6717173 Sed04g1299 Sed-Chr4:27209667 9.50E-154 transposed
Sed13g1351 Sed-Chr13:19019674 Sed04g1299 Sed-Chr4:27209667 4.90E-153 transposed
Sed14g0449 Sed-Chr14:4538046 Sed04g1299 Sed-Chr4:27209667 2.30E-128 wgd
Sed02g0708 Sed-Chr2:44923836 Sed04g1299 Sed-Chr4:27209667 1.50E-290 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1299 K07195 - csv:101208543 999.579