Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1308 ATGGTTAAACCCTGCTGGAAACCTCGTGATGATGACGATTCGAACGGACGAGTTGATGGATTGTTGTGGTCTAAGGATCTGGGGCATCATGTTTATGGACAATTCTCCATGGCTGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCTTTGAGTATGTCCAATCCAGGTCCGCAGGGGACCTTCATCGGTGTTTATGATGGTCATGGTGGACCTGAAGCTTCACGGTTCGTCAACGACAATCTCTTCAGCAATCTCAAAAGATTTGCATCTTTGCACCAAAACATATCAGAGAGCGTTATCAGCAAGGCTTTTGCAGCAACTGAAGAGGGATTTCTATCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCAGGATCTTGTTGTTTGGCGGGGATCATATGCAATGGACAACTATATATTGCAAATGCAGGCGATTCACGAGCAGTGCTCGGAAGAACTGAGAGAGCCACTAGAGAAGTCATTGCCATTCAATTGTCTACAGAGCACAATGCTAGCATAGAGTCAGTCAGAGATGAACTTCGGATGTTTCATCCAGAAGATCCTCAAATTGTGATTCTAAAACACAATGTTTGGCGGGTTAAAGGTATCATACAGATTTCAAGATCCATTGGTGACGCATATTTGAAGAAGGCAAAGTTCAACAGACCTCCTCTGCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCAATCCTCAGCGCAGAACCATCAATACTGGTACACAAACTCCGCCCGGATGATCAATATCTCATATTTGCTTCTGATGGCCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCTCGAAATGGAATAGCAAGGAGACTTATCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTAAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTCGTGTTCTTAGATCCTCATTTGATCAACGGTAGACCTTCCCCTTGTTCCTCCTCAATCAGAGGAGGAGAAGGTCTCCCTTCATCGGCGAACTCCTAG 1113 44.56 MVKPCWKPRDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMSNPGPQGTFIGVYDGHGGPEASRFVNDNLFSNLKRFASLHQNISESVISKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLAGIICNGQLYIANAGDSRAVLGRTERATREVIAIQLSTEHNASIESVRDELRMFHPEDPQIVILKHNVWRVKGIIQISRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLIKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSSSIRGGEGLPSSANS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27389475 27392489 + Sed0018163.1 Sed04g1308 709911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1308 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Sed04g1308 370 SMART PP2C_4 12 340 IPR001932 -
Sed04g1308 370 Pfam Protein phosphatase 2C 61 311 IPR001932 -
Sed04g1308 370 FunFam Phosphatase 2C family protein 23 351 - -
Sed04g1308 370 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Sed04g1308 370 Gene3D - 23 349 IPR036457 -
Sed04g1308 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169(InterPro)
Sed04g1308 370 PANTHER PROTEIN PHOSPHATASE 28 341 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g1308 370 CDD PP2Cc 32 342 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0717 Sed-Chr2:45005033 Sed04g1308 Sed-Chr4:27389475 2.10E-196 dispersed
Sed04g1308 Sed-Chr4:27389475 Sed04g2729 Sed-Chr4:39568291 5.20E-147 dispersed
Sed04g1308 Sed-Chr4:27389475 Sed04g1309 Sed-Chr4:27389475 5.80E-215 tandem
Sed02g0716 Sed-Chr2:45005033 Sed04g1308 Sed-Chr4:27389475 2.10E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1308 K01102 - csv:101210750 695.271