Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1311 ATGGCTGCTCTCGTGGAAGAGGTTTTGCCTCCGTCGTTGGACGCCACCGCCGAACAACCTCCTCTGTTTGACGGAACTACCAGGCTGTATACTGCTTACGTATGCCCTTATGCTCAACGTGTGTGGATCACCCGGAATTTCAAGGGACTACAAGATAAAATTAAGCTAGTTCCTTTGAACCTTCATAGTAGGCCTGACTGGTATAAGGAAAAAGTATACCCTCCAAACAAGGTTCCTGCTCTGGAACATAATGGGAAAATTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAACAACTTTGAAGGACCTTCTCTTCTCCCAGATGATTCTTCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACTGCGATAAGTTCATTGGCACAATAAACCCATCATTTAAAGGTGACATTGCAAAGGAAGCAGGTGCTCAATTTGATTATTTGGAAAGTGCTTTACAAAAATTTGATGGGCCCTTCATCCTTGGAGAAATCAGTCAGGTGGATATAGCATTCATTCCATTTGTTGAAAGGCTCCAAGTTTTCTTATTGGAGGTTTTTAAGATTGACATCACTGAAGGAAGGCCTAAACTAGCAGCATGGATTGAGGAGTTTAACAAGATTGATGGGTACAAGCAAACGAAAGCCGATCCCAAGCTGGTCGTTGAAGCCTACACGAAGAAGTTTTTGGGTTAG 702 42.17 MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYVCPYAQRVWITRNFKGLQDKIKLVPLNLHSRPDWYKEKVYPPNKVPALEHNGKIIGESLDLIKYVDNNFEGPSLLPDDSSKREYAEELLSYCDKFIGTINPSFKGDIAKEAGAQFDYLESALQKFDGPFILGEISQVDIAFIPFVERLQVFLLEVFKIDITEGRPKLAAWIEEFNKIDGYKQTKADPKLVVEAYTKKFLG 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27396333 27401052 - Sed0021969.1 Sed04g1311 709914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1311 233 PANTHER GLUTATHIONE S-TRANSFERASE L1 2 232 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Sed04g1311 233 SFLD Main (cytGST) 28 207 - -
Sed04g1311 233 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Sed04g1311 233 Pfam Glutathione S-transferase, C-terminal domain 143 205 - -
Sed04g1311 233 Gene3D - 104 233 - -
Sed04g1311 233 FunFam Glutathione S-transferase L2, chloroplastic 1 103 - -
Sed04g1311 233 SUPERFAMILY GST C-terminal domain-like 102 230 IPR036282 -
Sed04g1311 233 Gene3D Glutaredoxin 1 103 - -
Sed04g1311 233 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
Sed04g1311 233 FunFam Lambda class glutathione S-transferase 104 233 - -
Sed04g1311 233 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Sed04g1311 233 SFLD Glutathione Transferase (cytosolic) 28 207 IPR040079 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0719 Sed-Chr2:45010403 Sed04g1311 Sed-Chr4:27396333 2.30E-73 dispersed
Sed04g1311 Sed-Chr4:27396333 Sed04g2736 Sed-Chr4:39574289 6.00E-85 dispersed
Sed03g3068 Sed-Chr3:47423015 Sed04g1311 Sed-Chr4:27396333 2.70E-93 transposed
Sed02g0718 Sed-Chr2:45010403 Sed04g1311 Sed-Chr4:27396333 1.70E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1311 K00799 - csv:101211241 417.927