Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1315 ATGGTTTTTACAGAAGCTGGAGTTTCTGACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCTTCCGGTTCTGTTGATATGGTTACTGGGAGGTTTCTGCAGTTTCCGGCGAACAGAATGGAAAGCACCGGCAGCTTCAACTCGTCCTCCGTCGTCAACGGCGATCCTTCAGCCAGCACCACCGGAGATGAGGACTCCTCTTCCAACGCCGACGAGGCTTTTCCGTTCACTTTCGGAAAGGATTACGTGGTTCAAGAAACCTTAACATTGAAATCACTCTGTGTTTCCGATGACCACCGTAATCAGACGATGGAGCTCTTTCCGTTATCCGGCGGATTCTCGTCTTGTTCGAGTCCTCATGATCGGTGGCTGGAGGTTTCTCAGCCGGAAAATGGTTGTTTCGGCGGCGTTACGCCGGAGCGGCGAGTAATGATACCGCCGGTGCAGCCAATGAGGAAAAACCGGCGAGGGCCGAGGTCTCGAAGTTCACAGTATCGTGGGGTTACATTTTATCGTAGAACAGGGAGATGGGAATCGCATATTTGGGACTGTGGGAAACAGGTTTATTTGGGTGGTTTTGATACTGCTCATGCTGCTGCTAGAGCTTACGATCGGGCCGCGATAAGGTTTCGTGGAGTCGATGCAGATATCAATTTCAATGTTAGTGATTATGATGAAGATATTAAACAGATGAGTAATTTCACAAAAGAAGAGTTTGTTCATGTTCTTCGTCGCCATAGCACTGGATTTTCGAGAGGGAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGCAAGAAGTACATATATCTTGGTCTTTTTGATAGCGAGATTGAGGCTGCAAGGGCTTATGACAAGGCTGCTTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAGCCAAGTTCTTATGTTGCAGAGATGGCTTCTGAGATTGACACAATAGGAGAGAACGACCAGATTCTTGACCTGAACTTGGGCATTGCTCCCCCTAATCTTTCTGATGCCCAAAATGAGAGCATTGGTGTGTTTGATGATGACATTCATCACGGCTCGCATGATGTGCTCGTTGATAGAAGAGCAACAGTTAAGAACTCTGTTTCAGCAGCAGTTAGACCATCTCAACCATATGGCTTTGCAGTGACTTCCAATGACCATTCTTCTTCTTGGAATGTTTCAAATCTCAATCTCTTTCCCATCTCCAAGGAAAGAGGAACAGAGATGAGAATGGGGGTTGGTTCTATGGAGTGGCAAATCCATGGCCACTCAAATGGAACAACCTCTTTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCATCTGCTATTTACCATCACCATGGCACCAACTTATCCAATTTCTATTGTAGAAGTTGA 1428 46.71 MVFTEAGVSDPMLDLNLEVVSSGSVDMVTGRFLQFPANRMESTGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPFTFGKDYVVQETLTLKSLCVSDDHRNQTMELFPLSGGFSSCSSPHDRWLEVSQPENGCFGGVTPERRVMIPPVQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIRFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHVLRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASEIDTIGENDQILDLNLGIAPPNLSDAQNESIGVFDDDIHHGSHDVLVDRRATVKNSVSAAVRPSQPYGFAVTSNDHSSSWNVSNLNLFPISKERGTEMRMGVGSMEWQIHGHSNGTTSLPLFSAAASSGFPSSSSAIYHHHGTNLSNFYCRS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27502844 27506987 + Sed0001546.1 Sed04g1315 709918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1315 475 Pfam AP2 domain 255 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 Pfam AP2 domain 164 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 CDD AP2 163 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 Gene3D AP2/ERF domain 255 314 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 ProSiteProfiles AP2/ERF domain profile. 256 313 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 SMART rav1_2 164 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 SMART rav1_2 256 319 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 78 349 - -
Sed04g1315 475 SUPERFAMILY DNA-binding domain 163 222 IPR016177 GO:0003677(InterPro)
Sed04g1315 475 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 ProSiteProfiles AP2/ERF domain profile. 164 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 FunFam AP2-like ethylene-responsive transcription factor 163 222 - -
Sed04g1315 475 CDD AP2 255 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1315 475 SUPERFAMILY DNA-binding domain 255 314 IPR016177 GO:0003677(InterPro)
Sed04g1315 475 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1993 Sed-Chr3:13831234 Sed04g1315 Sed-Chr4:27502844 1.10E-95 dispersed
Sed04g1315 Sed-Chr4:27502844 Sed05g2900 Sed-Chr5:39971405 2.40E-96 dispersed
Sed02g0736 Sed-Chr2:45089942 Sed04g1315 Sed-Chr4:27502844 3.40E-204 wgd
Sed03g1992 Sed-Chr3:13831234 Sed04g1315 Sed-Chr4:27502844 3.00E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38118 PF00847 AP2 1.30E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1315 K09284 - csv:101211242 726.087