Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1316 ATGGAGACTACGCTTCTCCTTCTTGTTCTTCTCTTTCTTCTGGACGTCTCCGTTGCTCAGATGCCAGGATTTGTAAGTTTGGACTGTGGGGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATGCTCAAGTTCGTTTTGGAGAATCAATTGGCATTTCTGTTGCAAATGAGACAAGGAAGCAATACATGACCTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTGTACGGAAACTTCGACAACAACAACGTGTATCCAAAATTTGACATTTCCCTCGGAGCAACTCACTGGTCAACAATTGTCATATCTGATGCCAACACTATAGAGGTTCGAGAGCTCATATTTCTGGCTTCAACTCCTACAGCGAGTGTTTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCCACACTTGAACTTCGACAATTTAATGGCTCTATCTACTATACTGAGTTTGAGGATCAGTTTTACTTGAGTGTCTCAGCAAGGATAAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGACGATCCATTTGACCGGATATGGGAGTCTGATTCAGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACTGAAAAAGTTTCCACTAAAATGCCAATAGATGTAGATAGAGATGAGAGACCACCACAAAAAGTTATGCAGACAGCTGTAATTGGCAGAAACGGTTCATTAACTTACCGGTTGAACTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGAATCCAACTGATACGAGAAAATTCAGACTTGTACTTCCAGGCATGCCTGAAATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAGGGAAAATATCGGCTCTATGAGCCTGGTTACACCAACATAACCTTCCCTTTTGTATTATCTTTTAAGTTCGGGAAAACATCAGATTCTGTGTTGGGACCTCTGTTAAATGCTATGGAGATTACCAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGCTGCTAGCATAGTTTCAAAATTCCCATCTTCAGGTTGGGATGAAGGTGGTGATCCATGCATGCCAGCTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACAGCCAAGAATATTGAAAATTTCATTGTCCAAAAACAATTTGACGGGGACCATCCCTACAGACCTTGCAAAGTTGAGCGGTATTGTTGAATTGTGGCTTGATGGAAATTCATTTGTTGGTCCTGTACCCGATTTTACTGGCTGCGTGAACTTGAAAATCATCCATCTTGAAAACAACCAGTTGACCGGAGAGTTGCCTTCCTCTTTGGTAAATCTTCCAAGTTTACGGGAGCTGTATCTGCAGAATAACATGTTATCTGGAACAGTGCCTTCTGGGCTTTTCAATAAAAATCTAGTTCTAGACTACCGTGGAAACATTAATCTTCATGAAGGGGGGAAAAAGAACCACGTTTATATCATTGTGGGTTCTGTAATTGGTGTTCTTGTCCTGCTTTTGGTTACTGTAGCATCTTGCTACTGTTTGCAACGAGGAAGAAAAAACTATCGTGAACATGGAGAACTACTTGAAGAATCCAGGTCTGTTCAAAGATTTGCCTCTTCAAAGGGCGATGCTCCCAAGGAAACTGCACATTGCTTCAGTGTTAATGAAATTCAACAAGCAACAAGAAGTTTTGAAAGAAAAATTGGGTCTGGAGGCTTTGGCATTGTATACTATGGGAAATTAAATGATGGAAAAGAAATTGCAGTTAAAGTCTTGTCTAGTGAATCCTTTCAGGGAGAGCGAGAATTTACAAATGAGGTGACTCTTCTTTCAAGGATTCATCACAGGAATCTTGTACAATTTCTTGGGTATTGTCAAGAAGTGAAAAACAGTATGCTTGTCTATGAGTACATGCATAATGGAACTCTCAAAGAACATCTGTATGGTCCACTAACACGTGGAAAAACTATCAGTTGGATAAAGCGCCTTGAGATTGCTGAAGATGCTGCTAGAGGGATTGAATACCTTCACACAGGGTGTATACCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTGGACCGGCACATGAGAGCAAAGGTTTCAGATTTTGGTCTTTCAAAGCTTGCGGTGGAGGGCGTCTCCCACGTCTCCAGCATAGTTCGGGGAACTTTTGGATATTTGGATCCCGAGTATTATATCTCTCAGCAGTTGACAGACAAGAGTGATGTATATAGCTTTGGCGTTATTCTTCTAGAGTTGATATCCGGTCAAGAAGCTATATCTAATAACTTTGGTGCCAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATCGAGAGTGGGGACATTCAAGGGATCATCGATCCATCGCTACACAACGAGTTCGACATTCAATCGATGTGGAAAATCGCAGAGAAAGCTTTGATGTGTGTCCAGCCACATGGGCACATGAGGCCATCCATATCTGAAGTGCTTAAGGAGATACATGATTCGATCTTGATTGAAAGAGAACCTCTTCCAAGAGAAGGTAACTCTGACGAAATTTCTAGAAATTCAGCCCATTCTATGAATATGAGATCTCTTGATTTGTGTGGACACGAAAACTACGTGTCGTTTGACGAATCCATTGCTCGACCGACTGCAAGGTAG 2760 41.63 METTLLLLVLLFLLDVSVAQMPGFVSLDCGGQESFTDDIGLEWVPDAQVRFGESIGISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTASVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKMPIDVDRDERPPQKVMQTAVIGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLNPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGYTNITFPFVLSFKFGKTSDSVLGPLLNAMEITKYLEKSDGSLDGAVAASIVSKFPSSGWDEGGDPCMPAPWSWLQCNSDPQPRILKISLSKNNLTGTIPTDLAKLSGIVELWLDGNSFVGPVPDFTGCVNLKIIHLENNQLTGELPSSLVNLPSLRELYLQNNMLSGTVPSGLFNKNLVLDYRGNINLHEGGKKNHVYIIVGSVIGVLVLLLVTVASCYCLQRGRKNYREHGELLEESRSVQRFASSKGDAPKETAHCFSVNEIQQATRSFERKIGSGGFGIVYYGKLNDGKEIAVKVLSSESFQGEREFTNEVTLLSRIHHRNLVQFLGYCQEVKNSMLVYEYMHNGTLKEHLYGPLTRGKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMRAKVSDFGLSKLAVEGVSHVSSIVRGTFGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNNFGANCRNIVQWAKLHIESGDIQGIIDPSLHNEFDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIHDSILIEREPLPREGNSDEISRNSAHSMNMRSLDLCGHENYVSFDESIARPTAR 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27534978 27546764 + Sed0011403.1 Sed04g1316 709919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1316 919 ProSiteProfiles Protein kinase domain profile. 594 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1316 919 Gene3D Ribonuclease Inhibitor 372 519 IPR032675 -
Sed04g1316 919 Gene3D Phosphorylase Kinase; domain 1 568 669 - -
Sed04g1316 919 CDD STKc_IRAK 600 865 - -
Sed04g1316 919 Gene3D Transferase(Phosphotransferase) domain 1 670 875 - -
Sed04g1316 919 SMART serkin_6 594 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1316 919 SUPERFAMILY L domain-like 393 501 - -
Sed04g1316 919 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 670 876 - -
Sed04g1316 919 SUPERFAMILY Protein kinase-like (PK-like) 582 867 IPR011009 -
Sed04g1316 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1316 919 Pfam Protein kinase domain 596 863 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1316 919 FunFam Leucine-rich repeat protein kinase family protein 369 519 - -
Sed04g1316 919 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524(InterPro)
Sed04g1316 919 Pfam Malectin-like domain 27 357 IPR024788 -
Sed04g1316 919 FunFam Leucine-rich repeat receptor-like protein kinase 571 669 - -
Sed04g1316 919 Pfam Leucine rich repeat 450 490 IPR001611 GO:0005515(InterPro)
Sed04g1316 919 PANTHER OS07G0107800 PROTEIN-RELATED 453 872 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1316 Sed-Chr4:27534978 Sed06g2196 Sed-Chr6:45676882 5.60E-118 dispersed
Sed04g0541 Sed-Chr4:4018226 Sed04g1316 Sed-Chr4:27534978 5.80E-240 transposed
Sed09g0890 Sed-Chr9:29259607 Sed04g1316 Sed-Chr4:27534978 1.60E-101 transposed
Sed02g0738 Sed-Chr2:45114814 Sed04g1316 Sed-Chr4:27534978 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79000 PF12819 Malectin_like 5.90E-77 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1316 - - - 0.0