Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1330 | ATGGCCGATGCTCCGGCGAGCCCCGGCGGAGGTAGCCACGACAGCGGCGACCACAGTCCGAGGTCTAACGTTCGTGAACAGGACAGGTTCCTTCCGATTGCCAATATCAGCAGGATCATGAAGAAGGCTCTTCCTGCCAATGGCAAGATCGCCAAGGATGCTAAGGAAACCGTTCAGGAATGTGTTTCCGAGTTCATCAGTTTTGTCACCAGCGAGGCTAGTGATAAATGTCAGAGAGAGAAACGTAAGACGATTAATGGAGATGATTTGCTTTGGGCTTTGGCGACTCTTGGATTCGAGGATTATATCGATCCGCTTAAAACCTACTTGACTAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGGGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCATCGCCTAGTCCTCAGATTGCTCATCAAGGGTCGTATTCTCAAGGAGTTAACTATGGAAGTTCTCAAGTACTCTCTTGCTATCTCTTTCTTTACCTTTGTTTCTCTCACGCACATAAAAACAAGCTTGTATTTTCACAATGCCCTTTGTAG | 561 | 47.77 | MADAPASPGGGSHDSGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWALATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHPSPSPQIAHQGSYSQGVNYGSSQVLSCYLFLYLCFSHAHKNKLVFSQCPL | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27612408 | 27616674 | - | Sed0019558.5 | Sed04g1330 | 709933 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1330 | 186 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Sed04g1330 | 186 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Sed04g1330 | 186 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Sed04g1330 | 186 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 17 | 152 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Sed04g1330 | 186 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Sed04g1330 | 186 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g1330 | 186 | Gene3D | Histone, subunit A | 16 | 150 | IPR009072 | GO:0046982(InterPro) | |
Sed04g1330 | 186 | FunFam | Nuclear transcription factor Y subunit B-3 | 19 | 143 | - | - | |
Sed04g1330 | 186 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed04g1330 | 186 | MobiDBLite | consensus disorder prediction | 117 | 148 | - | - | |
Sed04g1330 | 186 | MobiDBLite | consensus disorder prediction | 117 | 132 | - | - | |
Sed04g1330 | 186 | SUPERFAMILY | Histone-fold | 27 | 132 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0740 | Sed-Chr2:45156867 | Sed04g1330 | Sed-Chr4:27612408 | 2.50E-81 | dispersed | |
Sed04g1328 | Sed-Chr4:27612408 | Sed04g1330 | Sed-Chr4:27612408 | 4.00E-87 | dispersed | |
Sed04g1330 | Sed-Chr4:27612408 | Sed04g2753 | Sed-Chr4:39682936 | 1.20E-54 | dispersed | |
Sed04g1329 | Sed-Chr4:27612408 | Sed04g1330 | Sed-Chr4:27612408 | 9.90E-87 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38124 | PF00808 | CBFD_NFYB_HMF | 1.00E-27 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1330 | K08065 | - | csv:101212699 | 290.041 |