Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1330 ATGGCCGATGCTCCGGCGAGCCCCGGCGGAGGTAGCCACGACAGCGGCGACCACAGTCCGAGGTCTAACGTTCGTGAACAGGACAGGTTCCTTCCGATTGCCAATATCAGCAGGATCATGAAGAAGGCTCTTCCTGCCAATGGCAAGATCGCCAAGGATGCTAAGGAAACCGTTCAGGAATGTGTTTCCGAGTTCATCAGTTTTGTCACCAGCGAGGCTAGTGATAAATGTCAGAGAGAGAAACGTAAGACGATTAATGGAGATGATTTGCTTTGGGCTTTGGCGACTCTTGGATTCGAGGATTATATCGATCCGCTTAAAACCTACTTGACTAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGGGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCATCGCCTAGTCCTCAGATTGCTCATCAAGGGTCGTATTCTCAAGGAGTTAACTATGGAAGTTCTCAAGTACTCTCTTGCTATCTCTTTCTTTACCTTTGTTTCTCTCACGCACATAAAAACAAGCTTGTATTTTCACAATGCCCTTTGTAG 561 47.77 MADAPASPGGGSHDSGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWALATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHPSPSPQIAHQGSYSQGVNYGSSQVLSCYLFLYLCFSHAHKNKLVFSQCPL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27612408 27616674 - Sed0019558.5 Sed04g1330 709933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1330 186 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Sed04g1330 186 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Sed04g1330 186 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Sed04g1330 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 152 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed04g1330 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Sed04g1330 186 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1330 186 Gene3D Histone, subunit A 16 150 IPR009072 GO:0046982(InterPro)
Sed04g1330 186 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Sed04g1330 186 MobiDBLite consensus disorder prediction 1 28 - -
Sed04g1330 186 MobiDBLite consensus disorder prediction 117 148 - -
Sed04g1330 186 MobiDBLite consensus disorder prediction 117 132 - -
Sed04g1330 186 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0740 Sed-Chr2:45156867 Sed04g1330 Sed-Chr4:27612408 2.50E-81 dispersed
Sed04g1328 Sed-Chr4:27612408 Sed04g1330 Sed-Chr4:27612408 4.00E-87 dispersed
Sed04g1330 Sed-Chr4:27612408 Sed04g2753 Sed-Chr4:39682936 1.20E-54 dispersed
Sed04g1329 Sed-Chr4:27612408 Sed04g1330 Sed-Chr4:27612408 9.90E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38124 PF00808 CBFD_NFYB_HMF 1.00E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1330 K08065 - csv:101212699 290.041