Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1342 ATGGCGGCCAAGAACCATTTAAGCATTCTTTTTCTTCTCTTTTTGCAGCTTTTTTATTCAGGGAGGGGCGAATTGCAAATGAATTATTATGCAAAAAGTTGCCCAAAAGCTGAAGAAATTATAAAACAGCAAGTTACTGATCTCTACTATGAACATGGAAACACTGCCGTTTCGTGGGTTAGAAACCTCTTCCACGATTGCGTTGTTGAGTCTTGTGATGCATCTTTGCTGTTGGAGACAGTGGTGGGAGTGGAATCAGAGAAGGATTCAGACAGAAGCTTTGGGATGAGAAATTTCAAATATGTAAACAAAATCAAAGCGGCCGTTGAAAGTCAATGCCCTCAGACCGTTTCTTGTGCCGACATCGTTGCCTTATCCGCTAGAGATGGCATAGTTATGCTAAAAGGACCTTATATAGAGTTGAAAACCGGACGAAGAGATAGCAAAGTGAGCTATTCAAATCTGGTAGCAGAGTTGGTTCCAAAGCACAATGAATCTCTCATAAATGTTCTTTCCCGCTTCAAATCCATTGGCATTGATACCGAAGCAGCCGTCGCTCTTTTAGGAGCTCACTCAGTAGGTCGAGTCCATTGCGTCAACTTAGTCGATAGGCTGTACCCAACACCCGATCCCAGCATCGATCCGGAGTACGTTAGTTACCTAAAACTCCGATGCCCGACGCCGAATCCGGATCCGGAGGCAGTGTTGTATTCAAGAAACGACCGCGTAACTACAATGATTCTGGACAATGTGTACTACAGCAATGTTCTAAAACATAGGGGATTGCTGATTGTGGACCAGCAATTGGTTTCAAATCCTGTTACCCTTCCTTATGTCAAGAAATTTGCAGCTGATAATAATTACTTTCATGCCCAATTTTCTAGGGGAATTCGTTTGTTGTCCGAGAATAATCCACTCACGGGCGATCAAGGGGAGATTAGAAAAGATTGTGGGTTTGTTAATTAA 966 42.86 MAAKNHLSILFLLFLQLFYSGRGELQMNYYAKSCPKAEEIIKQQVTDLYYEHGNTAVSWVRNLFHDCVVESCDASLLLETVVGVESEKDSDRSFGMRNFKYVNKIKAAVESQCPQTVSCADIVALSARDGIVMLKGPYIELKTGRRDSKVSYSNLVAELVPKHNESLINVLSRFKSIGIDTEAAVALLGAHSVGRVHCVNLVDRLYPTPDPSIDPEYVSYLKLRCPTPNPDPEAVLYSRNDRVTTMILDNVYYSNVLKHRGLLIVDQQLVSNPVTLPYVKKFAADNNYFHAQFSRGIRLLSENNPLTGDQGEIRKDCGFVN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27745121 27749626 - Sed0003132.1 Sed04g1342 709945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1342 321 CDD secretory_peroxidase 24 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed04g1342 321 Gene3D - 28 317 - -
Sed04g1342 321 SUPERFAMILY Heme-dependent peroxidases 24 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PANTHER - 10 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 ProSiteProfiles Plant heme peroxidase family profile. 24 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 Pfam Peroxidase 42 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 FunFam Peroxidase 161 300 - -
Sed04g1342 321 Gene3D Peroxidase, domain 2 162 301 - -
Sed04g1342 321 FunFam Peroxidase 28 172 - -
Sed04g1342 321 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1342 321 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1475 Sed-Chr1:10784384 Sed04g1342 Sed-Chr4:27745121 5.00E-101 dispersed
Sed04g1342 Sed-Chr4:27745121 Sed08g2365 Sed-Chr8:36911627 9.80E-102 dispersed
Sed03g1997 Sed-Chr3:13867420 Sed04g1342 Sed-Chr4:27745121 4.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1342 K00430 - csv:101215428 561.992