Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1347 ATGAGCGTGATCGACCTTTTGACTAGAGTAGATGCGATCTGCCAGAAGTATGACAAATATGATGTAGAGAAGCAGAGGGATCTCAATGTCTCTGGTGACGATGCATTTGCTCAACTCTATGCTACCGTTGAAGCCGACATTGAAGCCGCTCTGCAGAAAGCAGACGATGCTTCCAAAGAGAAGAATAGAGCGTCGGTGGTGGCACTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGATCCCCAAGTTGCAGAGATTGGCTGTAAAGCGGGTAAAAGGGCTATCAACTGAAGATCTTACTACTCGAAATGATTTGGTGCTTGCATTGCCTGATAGGATTCAAGCTATACCAGATGGAACTACTACTTCCACGAAGAAGAATGGGGGTTGGACATCCTCAACTTCACGCACTGAAATAAAATTTGACTCAGATGGGCAATTCGATAATGAGTACTTCCAACATTCTGAGCAGTCGAGTCAATTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTAGACATGATATCAGAAGGGTTGGACACTCTGAAGAACATGGCTCATGATATGAATGAGGAAGTAGACAGGCAAGTTCCCTTGATGGATGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTCAGATTAAAGCACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTTTGTATTGATATCATTTTGTTGTGCATAATCTTGGGTATTGCTGCTTATCTATACAATGTGTTGAAGAAGTGA 798 43.48 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFAQLYATVEADIEAALQKADDASKEKNRASVVALNAEIRRTKARLLEEIPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTTTSTKKNGGWTSSTSRTEIKFDSDGQFDNEYFQHSEQSSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27791204 27794996 + Sed0026014.1 Sed04g1347 709950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1347 265 Coils Coil 70 90 - -
Sed04g1347 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Sed04g1347 265 SMART tSNARE_6 165 232 IPR000727 -
Sed04g1347 265 Coils Coil 40 60 - -
Sed04g1347 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed04g1347 265 PANTHER SYNTAXIN 43 250 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed04g1347 265 FunFam Putative syntaxin-71-like 170 231 - -
Sed04g1347 265 Pfam SNARE domain 207 256 IPR000727 -
Sed04g1347 265 Gene3D - 170 231 - -
Sed04g1347 265 MobiDBLite consensus disorder prediction 121 140 - -
Sed04g1347 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Sed04g1347 265 CDD SNARE_Qc 175 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1347 Sed-Chr4:27791204 Sed05g2859 Sed-Chr5:39708111 3.50E-97 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1347 K08506 - csv:101215905 486.108