Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1349 ATGTCAAGTAATCCTTTTTCTGTTCTCTCCTCCACTACCACTGGCTTTACTCCACAACAAGATGCCAACCGTAACCCTAACCCTAAACCGAAACCCTCCGCCGCTGAGAAGAAAAAGAGAAACCTTCCCGGAAATCCAGATCCAGATGCGGAGGTTATTGCTATGTCGCCCAAATCACTCATGGCGACCAATCGATTCATATGCGAAATTTGCAACAAGGGATTTCAAAGAGACCAGAATCTGCAACTTCACCGGCGAGGGCATAACCTCCCGTGGAAGCTGCGACAGAGGACGAACAAGGAGGTGATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACGTGCGTCCACCACGACCCGTCACGAGCCCTCGGCGACCTCACCGGTATCAAGAAACATTTTAGCCGAAAACATGGAGAGAAAAAGTGGAAATGTGATAAGTGTTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAACTTGTGGGACTAGAGAATATAAATGTGATTGCGGAACTCTATTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATTACAACAGTTTCAGCAACAAATATTCTCAATAATCTCAGAAATAATAATAATAATAATAATAATGATTCTATTCTTCTTCACCAACAAGATCCACACCAATATTTGATTGATCATCAACAAAATAATCTTCAATCTCTTCAAGATGTTTCTCGGATTTCCCAATTCAATAATTCTGATAAATTTTTTAGAGATTTTGAAGATCAGCAACAAAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGATAATGCAATGAACAACAACAATAATAACATTTCCAACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCCGTTTGGATCGATAACCGATAGCGGGCTTTCGATGATTGAGAAGGAAGATGTTGAGAATAAGGGAAATTTTTCGAAAGCTGCCACGGCACTGTTTTCGGGTCAATCTTCTCAGTCTGGTGTCTCTTCGTCTCCGATGTCGGCTACCGCCCTTCTGCAAAAGGCAGCTCTTATGGGCTCTACTAGAAGCAACAACAACAACAATAATAACTCTCCCCTCTTTGGAGCAGGTGCTTTCGGAGTAATGAGCTCTTCTTCTTCGAATGGTGTAAGCTTGAACTCTCTTAATAAATCTCGAAGCTTGATGATGGTCGACTCGGTGCAGATGGCGGGTAGTAACTCGGATTTGAGCTCCAATTGTCTTAGCCAACTTCTTCTACCACCCAACGATAACAATGGTATGAAGAGTAGCGGTCAAACGAGAGACTTCCTCGGAGTCGAGAGAGGAGGAGAAATGCCTCGGGCACCGTTCCTCCCGCCCGAGCTAGCGAAATTTGCCACCATAAACTCAACCATGGGGCTAAGGCAATTTGCTGCCAACCACTAA 1473 43.25 MSSNPFSVLSSTTTGFTPQQDANRNPNPKPKPSAAEKKKRNLPGNPDPDAEVIAMSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNNNNNNNNDSILLHQQDPHQYLIDHQQNNLQSLQDVSRISQFNNSDKFFRDFEDQQQKNRSPLSLWLNQASADNAMNNNNNNISNFFGASSSSSNPFGSITDSGLSMIEKEDVENKGNFSKAATALFSGQSSQSGVSSSPMSATALLQKAALMGSTRSNNNNNNNSPLFGAGAFGVMSSSSSNGVSLNSLNKSRSLMMVDSVQMAGSNSDLSSNCLSQLLLPPNDNNGMKSSGQTRDFLGVERGGEMPRAPFLPPELAKFATINSTMGLRQFAANH 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27859027 27862020 + Sed0026812.2 Sed04g1349 709952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1349 490 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Sed04g1349 490 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Sed04g1349 490 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 169 208 - -
Sed04g1349 490 MobiDBLite consensus disorder prediction 31 45 - -
Sed04g1349 490 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Sed04g1349 490 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 104 138 - -
Sed04g1349 490 FunFam protein indeterminate-domain 12-like 45 114 - -
Sed04g1349 490 MobiDBLite consensus disorder prediction 1 52 - -
Sed04g1349 490 MobiDBLite consensus disorder prediction 1 27 - -
Sed04g1349 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Sed04g1349 490 Gene3D Classic Zinc Finger 47 119 - -
Sed04g1349 490 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Sed04g1349 490 Gene3D Classic Zinc Finger 120 200 - -
Sed04g1349 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 459 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g1349 490 SMART c2h2final6 143 163 IPR013087 -
Sed04g1349 490 SMART c2h2final6 66 88 IPR013087 -
Sed04g1349 490 SMART c2h2final6 108 138 IPR013087 -
Sed04g1349 490 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 142 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0660 Sed-Chr2:44399017 Sed04g1349 Sed-Chr4:27859027 3.10E-171 dispersed
Sed03g1998 Sed-Chr3:13885629 Sed04g1349 Sed-Chr4:27859027 6.90E-88 dispersed
Sed04g1349 Sed-Chr4:27859027 Sed04g1352 Sed-Chr4:27859027 6.40E-246 dispersed
Sed04g1348 Sed-Chr4:27859027 Sed04g1349 Sed-Chr4:27859027 6.40E-246 tandem
Sed04g1349 Sed-Chr4:27859027 Sed04g1350 Sed-Chr4:27859027 1.10E-224 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38126 PF12171 zf-C2H2_jaz 7.10E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1349 K25870 - csv:101213422 697.582