Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1349 | ATGTCAAGTAATCCTTTTTCTGTTCTCTCCTCCACTACCACTGGCTTTACTCCACAACAAGATGCCAACCGTAACCCTAACCCTAAACCGAAACCCTCCGCCGCTGAGAAGAAAAAGAGAAACCTTCCCGGAAATCCAGATCCAGATGCGGAGGTTATTGCTATGTCGCCCAAATCACTCATGGCGACCAATCGATTCATATGCGAAATTTGCAACAAGGGATTTCAAAGAGACCAGAATCTGCAACTTCACCGGCGAGGGCATAACCTCCCGTGGAAGCTGCGACAGAGGACGAACAAGGAGGTGATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACGTGCGTCCACCACGACCCGTCACGAGCCCTCGGCGACCTCACCGGTATCAAGAAACATTTTAGCCGAAAACATGGAGAGAAAAAGTGGAAATGTGATAAGTGTTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAACTTGTGGGACTAGAGAATATAAATGTGATTGCGGAACTCTATTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATTACAACAGTTTCAGCAACAAATATTCTCAATAATCTCAGAAATAATAATAATAATAATAATAATGATTCTATTCTTCTTCACCAACAAGATCCACACCAATATTTGATTGATCATCAACAAAATAATCTTCAATCTCTTCAAGATGTTTCTCGGATTTCCCAATTCAATAATTCTGATAAATTTTTTAGAGATTTTGAAGATCAGCAACAAAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGATAATGCAATGAACAACAACAATAATAACATTTCCAACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCCGTTTGGATCGATAACCGATAGCGGGCTTTCGATGATTGAGAAGGAAGATGTTGAGAATAAGGGAAATTTTTCGAAAGCTGCCACGGCACTGTTTTCGGGTCAATCTTCTCAGTCTGGTGTCTCTTCGTCTCCGATGTCGGCTACCGCCCTTCTGCAAAAGGCAGCTCTTATGGGCTCTACTAGAAGCAACAACAACAACAATAATAACTCTCCCCTCTTTGGAGCAGGTGCTTTCGGAGTAATGAGCTCTTCTTCTTCGAATGGTGTAAGCTTGAACTCTCTTAATAAATCTCGAAGCTTGATGATGGTCGACTCGGTGCAGATGGCGGGTAGTAACTCGGATTTGAGCTCCAATTGTCTTAGCCAACTTCTTCTACCACCCAACGATAACAATGGTATGAAGAGTAGCGGTCAAACGAGAGACTTCCTCGGAGTCGAGAGAGGAGGAGAAATGCCTCGGGCACCGTTCCTCCCGCCCGAGCTAGCGAAATTTGCCACCATAAACTCAACCATGGGGCTAAGGCAATTTGCTGCCAACCACTAA | 1473 | 43.25 | MSSNPFSVLSSTTTGFTPQQDANRNPNPKPKPSAAEKKKRNLPGNPDPDAEVIAMSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNNNNNNNNDSILLHQQDPHQYLIDHQQNNLQSLQDVSRISQFNNSDKFFRDFEDQQQKNRSPLSLWLNQASADNAMNNNNNNISNFFGASSSSSNPFGSITDSGLSMIEKEDVENKGNFSKAATALFSGQSSQSGVSSSPMSATALLQKAALMGSTRSNNNNNNNSPLFGAGAFGVMSSSSSNGVSLNSLNKSRSLMMVDSVQMAGSNSDLSSNCLSQLLLPPNDNNGMKSSGQTRDFLGVERGGEMPRAPFLPPELAKFATINSTMGLRQFAANH | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27859027 | 27862020 | + | Sed0026812.2 | Sed04g1349 | 709952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1349 | 490 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 121 | 200 | - | - | |
Sed04g1349 | 490 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Sed04g1349 | 490 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 169 | 208 | - | - | |
Sed04g1349 | 490 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Sed04g1349 | 490 | Pfam | Zinc finger, C2H2 type | 66 | 88 | IPR013087 | - | |
Sed04g1349 | 490 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 104 | 138 | - | - | |
Sed04g1349 | 490 | FunFam | protein indeterminate-domain 12-like | 45 | 114 | - | - | |
Sed04g1349 | 490 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Sed04g1349 | 490 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed04g1349 | 490 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - | |
Sed04g1349 | 490 | Gene3D | Classic Zinc Finger | 47 | 119 | - | - | |
Sed04g1349 | 490 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 163 | IPR036236 | - | |
Sed04g1349 | 490 | Gene3D | Classic Zinc Finger | 120 | 200 | - | - | |
Sed04g1349 | 490 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 459 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed04g1349 | 490 | SMART | c2h2final6 | 143 | 163 | IPR013087 | - | |
Sed04g1349 | 490 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
Sed04g1349 | 490 | SMART | c2h2final6 | 108 | 138 | IPR013087 | - | |
Sed04g1349 | 490 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 142 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0660 | Sed-Chr2:44399017 | Sed04g1349 | Sed-Chr4:27859027 | 3.10E-171 | dispersed | |
Sed03g1998 | Sed-Chr3:13885629 | Sed04g1349 | Sed-Chr4:27859027 | 6.90E-88 | dispersed | |
Sed04g1349 | Sed-Chr4:27859027 | Sed04g1352 | Sed-Chr4:27859027 | 6.40E-246 | dispersed | |
Sed04g1348 | Sed-Chr4:27859027 | Sed04g1349 | Sed-Chr4:27859027 | 6.40E-246 | tandem | |
Sed04g1349 | Sed-Chr4:27859027 | Sed04g1350 | Sed-Chr4:27859027 | 1.10E-224 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38126 | PF12171 | zf-C2H2_jaz | 7.10E-05 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1349 | K25870 | - | csv:101213422 | 697.582 |