Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1350 | ATGTCGCCCAAATCACTCATGGCGACCAATCGATTCATATGCGAAATTTGCAACAAGGGATTTCAAAGAGACCAGAATCTGCAACTTCACCGGCGAGGGCATAACCTCCCGTGGAAGCTGCGACAGAGGACGAACAAGGAGGTGATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACGTGCGTCCACCACGACCCGTCACGAGCCCTCGGCGACCTCACCGGTATCAAGAAACATTTTAGCCGAAAACATGGAGAGAAAAAGTGGAAATGTGATAAGTGTTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAACTTGTGGGACTAGAGAATATAAATGTGATTGCGGAACTCTATTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATTACAACAGTTTCAGCAACAAATATTCTCAATAATCTCAGAAATAATAATAATAATAATAATAATGATTCTATTCTTCTTCACCAACAAGATCCACACCAATATTTGATTGATCATCAACAAAATAATCTTCAATCTCTTCAAGATGTTTCTCGGATTTCCCAATTCAATAATTCTGATAAATTTTTTAGAGATTTTGAAGATCAGCAACAAAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGATAATGCAATGAACAACAACAATAATAACATTTCCAACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCCGTTTGGATCGATAACCGATAGCGGGCTTTCGATGATTGAGAAGGAAGATGTTGAGAATAAGGGAAATTTTTCGAAAGCTGCCACGGCACTGTTTTCGGGTCAATCTTCTCAGTCTGGTGTCTCTTCGTCTCCGATGTCGGCTACCGCCCTTCTGCAAAAGGCAGCTCTTATGGGCTCTACTAGAAGCAACAACAACAACAATAATAACTCTCCCCTCTTTGGAGCAGGTGCTTTCGGAGTAATGAGCTCTTCTTCTTCGAATGGTGTAAGCTTGAACTCTCTTAATAAATCTCGAAGCTTGATGATGGTCGACTCGGTGCAGATGGCGGGTAGTAACTCGGATTTGAGCTCCAATTGTCTTAGCCAACTTCTTCTACCACCCAACGATAACAATGGTATGAAGAGTAGCGGTCAAACGAGAGACTTCCTCGGAGTCGAGAGAGGAGGAGAAATGCCTCGGGCACCGTTCCTCCCGCCCGAGCTAGCGAAATTTGCCACCATAAACTCAACCATGGGGCTAAGGCAATTTGCTGCCAACCACTAA | 1311 | 42.72 | MSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNNNNNNNNDSILLHQQDPHQYLIDHQQNNLQSLQDVSRISQFNNSDKFFRDFEDQQQKNRSPLSLWLNQASADNAMNNNNNNISNFFGASSSSSNPFGSITDSGLSMIEKEDVENKGNFSKAATALFSGQSSQSGVSSSPMSATALLQKAALMGSTRSNNNNNNNSPLFGAGAFGVMSSSSSNGVSLNSLNKSRSLMMVDSVQMAGSNSDLSSNCLSQLLLPPNDNNGMKSSGQTRDFLGVERGGEMPRAPFLPPELAKFATINSTMGLRQFAANH | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27859027 | 27862020 | + | Sed0026812.3 | Sed04g1350 | 709953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1350 | 436 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 50 | 84 | - | - | |
Sed04g1350 | 436 | Gene3D | Classic Zinc Finger | 8 | 35 | - | - | |
Sed04g1350 | 436 | FunFam | Zinc finger protein MAGPIE | 8 | 35 | - | - | |
Sed04g1350 | 436 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 67 | 146 | - | - | |
Sed04g1350 | 436 | Gene3D | Classic Zinc Finger | 66 | 146 | - | - | |
Sed04g1350 | 436 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 88 | 112 | - | - | |
Sed04g1350 | 436 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 109 | IPR036236 | - | |
Sed04g1350 | 436 | Pfam | Zinc finger, C2H2 type | 12 | 34 | IPR013087 | - | |
Sed04g1350 | 436 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 34 | IPR013087 | - | |
Sed04g1350 | 436 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
Sed04g1350 | 436 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 405 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed04g1350 | 436 | SMART | c2h2final6 | 89 | 109 | IPR013087 | - | |
Sed04g1350 | 436 | SMART | c2h2final6 | 54 | 84 | IPR013087 | - | |
Sed04g1350 | 436 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
Sed04g1350 | 436 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 115 | 154 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1350 | Sed-Chr4:27859027 | Sed04g1352 | Sed-Chr4:27859027 | 7.30E-225 | dispersed | |
Sed04g1349 | Sed-Chr4:27859027 | Sed04g1350 | Sed-Chr4:27859027 | 1.10E-224 | tandem | |
Sed04g1350 | Sed-Chr4:27859027 | Sed04g1351 | Sed-Chr4:27859027 | 7.30E-225 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38127 | PF12171 | zf-C2H2_jaz | 6.20E-05 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1350 | K25870 | - | csv:101213422 | 627.476 |