Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1353 ATGTCGCCCAAATCACTCATGGCGACCAATCGATTCATATGCGAAATTTGCAACAAGGGATTTCAAAGAGACCAGAATCTGCAACTTCACCGGCGAGGGCATAACCTCCCGTGGAAGCTGCGACAGAGGACGAACAAGGAGGTGATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACGTGCGTCCACCACGACCCGTCACGAGCCCTCGGCGACCTCACCGGTATCAAGAAACATTTTAGCCGAAAACATGGAGAGAAAAAGTGGAAATGTGATAAGTGTTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAACTTGTGGGACTAGAGAATATAAATGTGATTGCGGAACTCTATTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATTACAACAGTTTCAGCAACAAATATTCTCAATAATCTCAGAAATAATAATAATAATAATAATAATGATTCTATTCTTCTTCACCAACAAGATCCACACCAATATTTGATTGATCATCAACAAAATAATCTTCAATCTCTTCAAGATGTTTCTCGGATTTCCCAATTCAATAATTCTGATAAATTTTTTAGAGATTTTGAAGATCAGCAACAAAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGATAATGCAATGAACAACAACAATAATAACATTTCCAACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCCGTTTGGATCGATAACCGATAGCGGGCTTTCGATGATTGAGAAGGAAGATGTTGAGAATAAGGGAAATTTTTCGAAAGCTGCCACGGCACTGTTTTCGGGTCAATCTTCTCAGTCTGGTGTCTCTTCGTCTCCGATGTCGGCTACCGCCCTTCTGCAAAAGGCAGCTCTTATGGGCTCTACTAGAAGCAACAACAACAACAATAATAACTCTCCCCTCTTTGGAGCAGGTGCTTTCGGAATGGCGGGTAGTAACTCGGATTTGAGCTCCAATTGTCTTAGCCAACTTCTTCTACCACCCAACGATAACAATGGTATGAAGAGTAGCGGTCAAACGAGAGACTTCCTCGGAGTCGAGAGAGGAGGAGAAATGCCTCGGGCACCGTTCCTCCCGCCCGAGCTAGCGAAATTTGCCACCATAAACTCAACCATGGGGCTAAGGCAATTTGCTGCCAACCACTAA 1227 42.71 MSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNNNNNNNNDSILLHQQDPHQYLIDHQQNNLQSLQDVSRISQFNNSDKFFRDFEDQQQKNRSPLSLWLNQASADNAMNNNNNNISNFFGASSSSSNPFGSITDSGLSMIEKEDVENKGNFSKAATALFSGQSSQSGVSSSPMSATALLQKAALMGSTRSNNNNNNNSPLFGAGAFGMAGSNSDLSSNCLSQLLLPPNDNNGMKSSGQTRDFLGVERGGEMPRAPFLPPELAKFATINSTMGLRQFAANH 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27859027 27862020 + Sed0026812.6 Sed04g1353 709956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1353 408 FunFam Zinc finger protein MAGPIE 8 35 - -
Sed04g1353 408 Gene3D Classic Zinc Finger 46 137 - -
Sed04g1353 408 FunFam protein indeterminate-domain 5, chloroplastic-like 67 146 - -
Sed04g1353 408 Pfam Zinc finger, C2H2 type 12 34 IPR013087 -
Sed04g1353 408 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 377 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g1353 408 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 50 84 - -
Sed04g1353 408 SUPERFAMILY beta-beta-alpha zinc fingers 11 109 IPR036236 -
Sed04g1353 408 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 115 154 - -
Sed04g1353 408 Gene3D Classic Zinc Finger 8 35 - -
Sed04g1353 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Sed04g1353 408 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Sed04g1353 408 SMART c2h2final6 89 109 IPR013087 -
Sed04g1353 408 SMART c2h2final6 54 84 IPR013087 -
Sed04g1353 408 SMART c2h2final6 12 34 IPR013087 -
Sed04g1353 408 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 88 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1353 Sed-Chr4:27859027 Sed06g0083 Sed-Chr6:477339 4.90E-82 dispersed
Sed04g1352 Sed-Chr4:27859027 Sed04g1353 Sed-Chr4:27859027 1.30E-206 tandem
Sed04g1353 Sed-Chr4:27859027 Sed04g1354 Sed-Chr4:27859027 3.70E-207 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38130 PF12171 zf-C2H2_jaz 5.70E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1353 K25870 - csv:101213422 575.859