Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1357 ATGGGTAACGTCGCCAGTAACGCCTCCAACGCCCGGAGAAGACACGGTAGCCGCCGCACCCATCCGCCGCCGCCGCCGCCCCCACCCCAGCCCGAGATCACCACCAACCGCTACGTTTTCGCCGCTGCCACGCCCTACCCTCCGCAATACCCTAACCACCCCAATCACCCCCCGCCCTACTATCAGTACCCTGCTTACTTCCCCCCACCGCCGCCCATGCCCCTGCCGGCGCCTTACGACCACCGCCACCACATGGATCCTGCCAATTGGGTCGCTGGGAGGTACCCTTACGGCCCTCCCATGCCCCCCCAAACGCCCTATGTCGAGCATCAGAAGGCGGTTACGATCCGAAACGATGTCAATCTCAAGAAGGAAACTCTTCGGGTTGAGCCTGATGATCAAAACCCTGCCCAATTCCTTGTCTCTTTCACCTTTGATGCCACCGTCGCCGGGAGTATCACCATCTTATTCTTTGCAAAAGAAGGCGACGATTGTAACTTGACACCCGTAAAAGAAGATGTTTTTCAACCAGTAACTGTCCATTTCGAACAAGGCCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCGGAATTACTGAAAGTAAATGACACAGATGTCTATCCATTAGCTGTGAAAGCCGAGGCTTCCACTGACTGCCAAACTGGCCCCGACGGTACCGTGGTACCAGAAGCCATGAATTCTCAGATAACACAGGCAGTGTTTGAGAAAGATAAAGGTGTATTTCAGGTAAGAGTGTTGAAACAGATTCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATCTATGGAATTGGAAACTCAGTTGAAGGCGACGTGGATGGAAATGACCCAGGAAAGGAATGTGTCATTTGCTTATCAGAACCCCGAGATACGACTGTCCTTCCTTGCCGACACATGTGTATGTGTAGTGGCTGTGCTAAGGTTTTGAGGTTCCAGACGGATCGATGCCCGATTTGCAGACAACCGGTTGATAGGCTCTTAGAGATAAGGGTCAACAATGGGCCAGAAGAATAA 1068 52.06 MGNVASNASNARRRHGSRRTHPPPPPPPPQPEITTNRYVFAAATPYPPQYPNHPNHPPPYYQYPAYFPPPPPMPLPAPYDHRHHMDPANWVAGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDDQNPAQFLVSFTFDATVAGSITILFFAKEGDDCNLTPVKEDVFQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESELLKVNDTDVYPLAVKAEASTDCQTGPDGTVVPEAMNSQITQAVFEKDKGVFQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTDRCPICRQPVDRLLEIRVNNGPEE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27884137 27887562 - Sed0023724.1 Sed04g1357 709960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1357 355 ProSiteProfiles Zinc finger RING-type profile. 299 338 IPR001841 -
Sed04g1357 355 SMART ring_2 299 337 IPR001841 -
Sed04g1357 355 Pfam Zinc finger, C3HC4 type (RING finger) 297 343 - -
Sed04g1357 355 SUPERFAMILY RING/U-box 298 344 - -
Sed04g1357 355 CDD mRING-HC-C3HC5_MGRN1-like 297 338 IPR045195 -
Sed04g1357 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 348 IPR013083 -
Sed04g1357 355 PANTHER MAHOGUNIN 1 351 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Sed04g1357 355 FunFam probable E3 ubiquitin-protein ligase LOG2 283 348 - -
Sed04g1357 355 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1274 Sed-Chr2:49424173 Sed04g1357 Sed-Chr4:27884137 1.60E-74 transposed
Sed12g0889 Sed-Chr12:5526155 Sed04g1357 Sed-Chr4:27884137 1.20E-11 transposed
Sed02g0658 Sed-Chr2:44360718 Sed04g1357 Sed-Chr4:27884137 5.40E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1357 K27504 - csv:101216150 565.844