Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1358 ATGGCAACTAGGGGTCAAGGTGGTATACAACAATTGCTTGCTGCGGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGAAATGCAAAATTGGCTAGACTGAAACAAGCCAAAGAAGAGGCCGAAAAGGAAATTGCTTCTTACCGTGCACAAGTGGAGGCTGAGTTCCAAAGAAAACTAGCTGAGAGTAGTGGAGATTCAGGAGCTAACGTTAAGCGGCTTGAAGTCGAGACAGATGCAAAGATTGATCACCTGAAAGGAGAGTCTGCTAGAATTTCAAACGATGTTGTGGACATGCTCCTGATGCATGTGACAACCGTGAAAAATTGA 330 44.85 MATRGQGGIQQLLAAEQEAQHIVNAARNAKLARLKQAKEEAEKEIASYRAQVEAEFQRKLAESSGDSGANVKRLEVETDAKIDHLKGESARISNDVVDMLLMHVTTVKN 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27897934 27900744 - Sed0015633.1 Sed04g1358 709961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1358 109 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 3 109 IPR005124 GO:0016471(PANTHER)|GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g1358 109 NCBIfam V-type ATPase subunit G 1 108 IPR005124 GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g1358 109 Gene3D - 1 109 - -
Sed04g1358 109 Coils Coil 24 58 - -
Sed04g1358 109 Pfam Vacuolar (H+)-ATPase G subunit 6 108 IPR005124 GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g1358 109 FunFam V-type proton ATPase subunit G 2 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0656 Sed-Chr2:44348170 Sed04g1358 Sed-Chr4:27897934 3.50E-43 dispersed
Sed02g0657 Sed-Chr2:44348444 Sed04g1358 Sed-Chr4:27897934 3.50E-43 dispersed
Sed11g0912 Sed-Chr11:22307180 Sed04g1358 Sed-Chr4:27897934 1.60E-19 transposed
Sed02g0655 Sed-Chr2:44348170 Sed04g1358 Sed-Chr4:27897934 3.50E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1358 K02152 - csv:101216393 166.007