Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g1380 | ATGTCACAAGATTCTGAGGAGATAAAGACGAGTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTGACCCTTCTCCTTCTCTCGGCCCAGTTATAACCAACAGCAACCCTCCACAAGAAATTGGCAGAGCCACAACCCAAGAAATGGAGTCTACAACTGATTCCAACAAGCCTGAGCCTGTCCCCGCCGTCCGGTTCGGGGAGCTTTTCAGATTCGCCGATGGGTTAGATTACGTTTTGATGGCAATTGGGTCAGTTGGAGCTCTCGTCCATGGCTGTTCTCTGCCTCTGTTTCTTCGATTCTTCGCCGATCTTGTTAACTCTTTCGGGTCTTATGCCAATGATGTGGATAAGATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTTGTTGTTGGAGCTGCCATATGGGCATCATCCTGGGCAGAGATTTCTTGTTGGATGTGGACCGGCGAGCGGCAGTCGACGAAGATGAGGATCAAGTACCTAGAAGCAGCATTGGACCAAGACATTCAGTTTTTTGATACAGAGGTTCGAACATCTGATGTCGTTTTCGCCATCAACACTGATGCAGTAATGGTCCAAGATGCCATTAGTGAGAAGCTGGGAAACTTTATCCATTATATGGCAACATTTGTTTCTGGGTTCGTTGTGGGCTTCACTGCTGTGTGGCAATTGGCTTTGGTAACTCTTGCTGTGGTTCCTCTTATTGCTGTAATCGGCGGCATCTACGCCACCACCATAGCCAAGCTCACTGCCAAGACTCAAGAAGCTCTATCAGAAGCTGGGAATATCGTCGAACAGACAATAGGTCAAATTCGAGTTGTTTTTGCGTTCGTGGGTGAATCAAGATCATTACAGAGGTACTCCTCTGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGCTGCTACGCTCTTTTGCTCTGGTATGGAGGTTATCTTGTTCGACACCACGCCACCAATGGCGGTCTCGCCATTGCCACCATGTTTGCTGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCTAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGATTCAGTTTCAGGATTGGTTGAGCTGAAGAGTGTAGATTTCTCATACCCATCAAGGCCAGATGCAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCTGGAAAAACTATAGCTCTGGTTGGTAGCAGTGGCTCCGGCAAGAGCACCGTTGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGTGAAGTTCTACTTGATGGGTGTGACATAAAAACTTTGAAGCTAAGGTGGTTAAGGCAGCAGATAGGGCTGGTGAGCCAAGAGCCTGCTCTTTTTGCCACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAACCCAAGATGAGGTCGAGGAAGCAGCTCGAGTCGCCAATGCTCATTCCTTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGGGGACAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCGATCCTGCTCTTAGATGAGGCGACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATCGGGAGGACCACTCTTGTTATTGCCCATCGTCTCTCTACAATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATAGGGACTCATGACGAGCTTTTTGCGAAAGGAGAAAATGGTGTATATGCAAAGCTCATCCGAATGCAGGAGACAGCTCATGAAACTGCTCTCAACAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATAATTACACGGAATTCTTCCTATGGACGATCGCCATATTCACGTCGATTATCTGACTTCTCCACATCTGATTTTAGTCTTTCTCTAGATGCTACACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGCAGCAGGCCAGTTCCTTTTGGCGTCTGGTGAAAATGAATTCCCCTGAATGGCTCTATGCATTACTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTACTACAACCCAGACCATGCTTTCATGAGCAGAGAAATAATAAAGTACTGTTATTTATTGATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAACATTACTTCTGGGATATCGTTGGAGAGAATCTCACCAAACGTGTCAGAGAGAAAATGCTGACAGCAGTTCTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCCAAGATTGCTACAAGGCTGGCCCTTGATGCTAACAACGTCCGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACTGCCGGATTTGTTTTGCAATGGCGCCTCGCTCTTGTCCTTGTAGCCGTCTTCCCTGTGGTTGTCGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCGACACAACTAGCAGGGGAGGCGATAGCCAATGTACGGACAGTTGCTGCATTCAACTCAGAGGAAAAGATCGTCAGACTTTTCTCAACCAACCTCGAGATCCCACTTCGACGTTGCTTTTGGAAGGGACAGATTGCCGGTAGCGGATTTGGCGTTGCTCAGTTCTCTCTTTATGCTTCCTATGCTCTAGGTCTTTGGTATGCATCATGGCTTGTCAAGCATGGGCTTTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTGATGGTTTCAGCAAATGGTGCAGCTGAAACACTTACTCTTGCTCCTGACTTTATCAAGGGTGGGCGAGCTATGAGTTCAGTCTTCGCCCTTCTTGACCGCAAAACTGAAATCGAACCTGATGATATAGATGCCACCCCAGTCCCAGATAAACTTCGAGGAGAGGTTGAATTTAAACATGTTGACTTTTCCTACCCAACCCGTCCTGATATCCTTGTCTTCAGAGACCTTAGTTTACGAGCTCGAGCAGGTAAGATTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTACAAAGATTCTATGAGCCATCATCAGGACGAGTTATGATTGATGGAAAGGATATCCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTGTTTGCTGCTTCCATTTATGATAATATTGCCTATGGGCACGAATCAGCCACCGAAGCCGAGATTGTTGAAGCTGCTACTTTGGCGAATGCTCATAAGTTCATATCCGCATTGCCAGAAGGATACAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTATCAGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCTCTAATCAGAAAGGCAGAGCTTATGCTACTAGATGAAGCAACAAGCGCACTGGATGCCGAGTCAGAGCGATCCGTCCAGGAGGCTCTCGACCGAGCTTGTTCCGGAAAAACAACCATCGTAGTTGCTCATCGACTATCAACTATCAGAAACGCTCATGTCATTGCAGTAATCGACGACGGCAAAGTTTCAGAGCAAGGATCACACTCACATTTGTTGAAAAATTATCCGGACGGGTGTTACGCCCGGATGATACAGTTACAAAGATTCACAAACAGCCAAGTCATTGGTATGACTACAGGATCAACTTCCTCAGCAAGAACTAGAGAGGAAGAGGACAGAGAGAGCTAG | 3999 | 46.44 | MSQDSEEIKTSEQWKWSEMQGLELLSSDPSPSLGPVITNSNPPQEIGRATTQEMESTTDSNKPEPVPAVRFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYATTIAKLTAKTQEALSEAGNIVEQTIGQIRVVFAFVGESRSLQRYSSALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELDSVSGLVELKSVDFSYPSRPDARILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGCDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDATQDEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQETAHETALNNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSLDATLPNYRLEKLAFKQQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHYFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIATRLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMSSVFALLDRKTEIEPDDIDATPVPDKLRGEVEFKHVDFSYPTRPDILVFRDLSLRARAGKILALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIVEAATLANAHKFISALPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTNSQVIGMTTGSTSSARTREEEDRES | 1332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 28162001 | 28168106 | - | Sed0018529.1 | Sed04g1380 | 709983 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g1380 | 1332 | MobiDBLite | consensus disorder prediction | 24 | 63 | - | - | |
| Sed04g1380 | 1332 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 742 | 1029 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed04g1380 | 1332 | CDD | ABC_MTABC3_MDL1_MDL2 | 410 | 649 | - | - | |
| Sed04g1380 | 1332 | FunFam | ABC transporter B family member 1 | 1055 | 1305 | - | - | |
| Sed04g1380 | 1332 | SUPERFAMILY | ABC transporter transmembrane region | 729 | 1049 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed04g1380 | 1332 | CDD | ABC_MTABC3_MDL1_MDL2 | 1065 | 1304 | - | - | |
| Sed04g1380 | 1332 | Gene3D | ABC transporter type 1, transmembrane domain | 133 | 1038 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed04g1380 | 1332 | MobiDBLite | consensus disorder prediction | 656 | 688 | - | - | |
| Sed04g1380 | 1332 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 732 | 1047 | - | - | |
| Sed04g1380 | 1332 | Gene3D | - | 1056 | 1311 | IPR027417 | - | |
| Sed04g1380 | 1332 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1057 | 1304 | IPR027417 | - | |
| Sed04g1380 | 1332 | SMART | AAA_5 | 1092 | 1284 | IPR003593 | GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | SMART | AAA_5 | 437 | 623 | IPR003593 | GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | FunFam | ABC transporter B family member 1 | 73 | 408 | - | - | |
| Sed04g1380 | 1332 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1065 | 1301 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | MobiDBLite | consensus disorder prediction | 24 | 65 | - | - | |
| Sed04g1380 | 1332 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 86 | 373 | - | - | |
| Sed04g1380 | 1332 | Gene3D | - | 408 | 673 | IPR027417 | - | |
| Sed04g1380 | 1332 | FunFam | ABC transporter B family member 1 | 721 | 1030 | - | - | |
| Sed04g1380 | 1332 | ProSitePatterns | ABC transporters family signature. | 1204 | 1218 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | Pfam | ABC transporter transmembrane region | 744 | 1012 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed04g1380 | 1332 | Pfam | ABC transporter transmembrane region | 88 | 359 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed04g1380 | 1332 | ProSitePatterns | ABC transporters family signature. | 549 | 563 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 401 | 649 | IPR027417 | - | |
| Sed04g1380 | 1332 | Pfam | ABC transporter | 1084 | 1232 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 410 | 646 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | PANTHER | ABC TRANSPORTER B FAMILY | 48 | 675 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Sed04g1380 | 1332 | FunFam | ABC transporter B family member 1 | 400 | 650 | - | - | |
| Sed04g1380 | 1332 | Pfam | ABC transporter | 428 | 577 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed04g1380 | 1332 | SUPERFAMILY | ABC transporter transmembrane region | 74 | 388 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed04g1380 | 1332 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 87 | 375 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2776 | Sed-Chr1:22956184 | Sed04g1380 | Sed-Chr4:28162001 | 1.10E-274 | dispersed | |
| Sed02g0628 | Sed-Chr2:44084880 | Sed04g1380 | Sed-Chr4:28162001 | 0.00E+00 | dispersed | |
| Sed03g0061 | Sed-Chr3:364957 | Sed04g1380 | Sed-Chr4:28162001 | 1.20E-273 | dispersed | |
| Sed03g0201 | Sed-Chr3:1247429 | Sed04g1380 | Sed-Chr4:28162001 | 0.00E+00 | dispersed | |
| Sed04g1380 | Sed-Chr4:28162001 | Sed11g2000 | Sed-Chr11:34177996 | 0.00E+00 | dispersed | |
| Sed02g0627 | Sed-Chr2:44084880 | Sed04g1380 | Sed-Chr4:28162001 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g1380 | K05658 | - | csv:101220974 | 2355.1 |