Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1381 ATGGCGATCACGATGGGAAAATCTTTCAATCCCAAAACCCTAATTTACAGCTCCCCTCGTCCCCCGATCCAGTTTCCGATCGACCCATCAATCTCCATTGCTTCGTTCCTCTTTCAAAACTCCTCTTCTTACCCCAACGCCCTCGCCCTCGCCGACGCCGATTCCGGCGAAACCCTAACTTTCCGGCAGCTCCAAATCCAAGTCTCCAAGCTTGCCCATGTCTTCATCCAACTTGGGATTCGAAAAAACGACGTGGTTCTCATAATCGCCCCTAATTCCATTCATTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAACCCTGCTTACACCTTCGCCGAACTCTCTAAACAAGCCCACAATTGCAAACCCAAAATCGTAATCGCCGTTCCCGATCTCTGGGAAGTAATCGATCAACTTAATTTGCCTTCTATTCTTCTGGGTTCTGGAATTTCTTCGAAATTTCCCCGCCCCAACATCTGGGGTTACTCTGATTTGATTAAAAACGCCGGCGATGTGTCCGATTTGCCGGTTTGTGAAGTGGGTCAGAGCGATGTAGCGGCGCTTTTGTATTCATCGGGGACGACGGGGATAAGCAAGGGAGTGATTCTGACTCACCGGAACTTCATAACGGCGGCGTTAATGGTGTCTCATGATCAGGATCTTTACGGTGATCCTAAAAATGTGTTTTTGTGTTTTCTTCCTATGTTTCATGTGTTTGGTCTGGGCGTGATTCTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCGATGGAGAAATTCGAGCTGGAAAAGGCTTTGAGAGTGGTGATGGAGTACAAGATCAGTCATCTTTATCTTGTTCCTCCTGTACTCATAGCTTTGACCAAACAAAATGCTGTGATGAAGAAGTATGATTTGTCTTCATTGAAGCTGATTTTGTCTGGGGCTGCGCCTCTTGGGAAGGATGTGATGGAGGAATGCTCTAAGATTCTACCTCACACCAAGATCAAGCAGGGATATGGAATGACAGAAACTTGTGGAGTTATTTCTATTGAGAACCTAGGGGTAGAATCTACAGTATCTGGGGCAACTGGATTGCTTGTTTCAGGAGTTGAAGCCCAAATTTTGAGGACAGAAACAAAGAAATGTCTTCCACCAGGTGAAACAGGGGAAATATGTGTCCGAGGACCAAATATGATGAAAGGGTATTTCAATAATCAGAAAGCCACCAGTGAAACCATAGATGATCAAGGATGGGTACATACCGGAGATATCGGATATTTCAATGAAGAAGGAGAATTATTTGTTGTGGACAGAATCAAAGAACTCATCAAGTGTTATGGTTTTCAGGTTGCACCAGCGGAGCTTGAAGCACTACTACTTTCCCATCCTCAAATTGTAGATGCCATTGTTATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCGCCTAATTGTTCGATAAAGGAACAAGATGTTCAAAAGTTTATTGCAGGGCAGGTTGCACCATACAAGAGATTAAAAAGAGTTACCTTCACGAGTAGTGTTCCAAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGCTCATAGCACAAGTCCGAGCCAAGATGTAG 1641 45.03 MAITMGKSFNPKTLIYSSPRPPIQFPIDPSISIASFLFQNSSSYPNALALADADSGETLTFRQLQIQVSKLAHVFIQLGIRKNDVVLIIAPNSIHFPVCFFAIVAIGAIATTCNPAYTFAELSKQAHNCKPKIVIAVPDLWEVIDQLNLPSILLGSGISSKFPRPNIWGYSDLIKNAGDVSDLPVCEVGQSDVAALLYSSGTTGISKGVILTHRNFITAALMVSHDQDLYGDPKNVFLCFLPMFHVFGLGVILYSQLQRGNTVVSMEKFELEKALRVVMEYKISHLYLVPPVLIALTKQNAVMKKYDLSSLKLILSGAAPLGKDVMEECSKILPHTKIKQGYGMTETCGVISIENLGVESTVSGATGLLVSGVEAQILRTETKKCLPPGETGEICVRGPNMMKGYFNNQKATSETIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQIVDAIVIPYPDDKAGEVPIAFVVRSPNCSIKEQDVQKFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRRELIAQVRAKM 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28205449 28210650 - Sed0009777.1 Sed04g1381 709984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1381 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 538 - GO:0016405(PANTHER)
Sed04g1381 546 CDD 4CL 25 538 - -
Sed04g1381 546 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Sed04g1381 546 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Sed04g1381 546 Pfam AMP-binding enzyme 39 406 IPR000873 -
Sed04g1381 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 443 - -
Sed04g1381 546 Gene3D - 444 545 IPR045851 -
Sed04g1381 546 Gene3D - 14 443 IPR042099 -
Sed04g1381 546 SUPERFAMILY Acetyl-CoA synthetase-like 28 544 - -
Sed04g1381 546 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1381 Sed-Chr4:28205449 Sed04g1383 Sed-Chr4:28205449 1.30E-295 dispersed
Sed04g1381 Sed-Chr4:28205449 Sed04g1382 Sed-Chr4:28205449 1.30E-295 tandem
Sed11g1313 Sed-Chr11:28858233 Sed04g1381 Sed-Chr4:28205449 5.40E-185 transposed
Sed02g0625 Sed-Chr2:44050761 Sed04g1381 Sed-Chr4:28205449 2.60E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1381 K01904 - csv:101204417 903.664