Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1382 ATGGCGATCACGATGGGAAAATCTTTCAATCCCAAAACCCTAATTTACAGCTCCCCTCGTCCCCCGATCCAGTTTCCGATCGACCCATCAATCTCCATTGCTTCGTTCCTCTTTCAAAACTCCTCTTCTTACCCCAACGCCCTCGCCCTCGCCGACGCCGATTCCGGCGAAACCCTAACTTTCCGGCAGCTCCAAATCCAAGTCTCCAAGCTTGCCCATGTCTTCATCCAACTTGGGATTCGAAAAAACGACGTGGTTCTCATAATCGCCCCTAATTCCATTCATTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAACCCTGCTTACACCTTCGCCGAACTCTCTAAACAAGCCCACAATTGCAAACCCAAAATCGTAATCGCCGTTCCCGATCTCTGGGAAGTAATCGATCAACTTAATTTGCCTTCTATTCTTCTGGGTTCTGGAATTTCTTCGAAATTTCCCCGCCCCAACATCTGGGGTTACTCTGATTTGATTAAAAACGCCGGCGATGTGTCCGATTTGCCGGTTTGTGAAGTGGGTCAGAGCGATGTAGCGGCGCTTTTGTATTCATCGGGGACGACGGGGATAAGCAAGGGAGTGATTCTGACTCACCGGAACTTCATAACGGCGGCGTTAATGGTGTCTCATGATCAGGATCTTTACGGTGATCCTAAAAATGTGTTTTTGTGTTTTCTTCCTATGTTTCATGTGTTTGGTCTGGGCGTGATTCTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCGATGGAGAAATTCGAGCTGGAAAAGGCTTTGAGAGTGGTGATGGAGTACAAGATCAGTCATCTTTATCTTGTTCCTCCTGTACTCATAGCTTTGACCAAACAAAATGCTGTGATGAAGAAGTATGATTTGTCTTCATTGAAGCTGATTTTGTCTGGGGCTGCGCCTCTTGGGAAGGATGTGATGGAGGAATGCTCTAAGATTCTACCTCACACCAAGATCAAGCAGGGATATGGAATGACAGAAACTTGTGGAGTTATTTCTATTGAGAACCTAGGGGTAGAATCTACAGTATCTGGGGCAACTGGATTGCTTGTTTCAGGAGTTGAAGCCCAAATTTTGAGGACAGAAACAAAGAAATGTCTTCCACCAGGTGAAACAGGGGAAATATGTGTCCGAGGACCAAATATGATGAAAGGGTATTTCAATAATCAGAAAGCCACCAGTGAAACCATAGATGATCAAGGATGGGTACATACCGGAGATATCGGATATTTCAATGAAGAAGGAGAATTATTTGTTGTGGACAGAATCAAAGAACTCATCAAGTGTTATGGTTTTCAGGTTGCACCAGCGGAGCTTGAAGCACTACTACTTTCCCATCCTCAAATTGTAGATGCCATTGTTATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCGCCTAATTGTTCGATAAAGGAACAAGATGTTCAAAAGTTTATTGCAGGGCAGGTAATCTTTTGCAAACTCCCATTCAAGAACAAAGGGAACAGAAGAGACCTTTTATTGATATGGGTCTATCGTAACTCTTGA 1608 44.71 MAITMGKSFNPKTLIYSSPRPPIQFPIDPSISIASFLFQNSSSYPNALALADADSGETLTFRQLQIQVSKLAHVFIQLGIRKNDVVLIIAPNSIHFPVCFFAIVAIGAIATTCNPAYTFAELSKQAHNCKPKIVIAVPDLWEVIDQLNLPSILLGSGISSKFPRPNIWGYSDLIKNAGDVSDLPVCEVGQSDVAALLYSSGTTGISKGVILTHRNFITAALMVSHDQDLYGDPKNVFLCFLPMFHVFGLGVILYSQLQRGNTVVSMEKFELEKALRVVMEYKISHLYLVPPVLIALTKQNAVMKKYDLSSLKLILSGAAPLGKDVMEECSKILPHTKIKQGYGMTETCGVISIENLGVESTVSGATGLLVSGVEAQILRTETKKCLPPGETGEICVRGPNMMKGYFNNQKATSETIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQIVDAIVIPYPDDKAGEVPIAFVVRSPNCSIKEQDVQKFIAGQVIFCKLPFKNKGNRRDLLLIWVYRNS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28205449 28210650 - Sed0009777.2 Sed04g1382 709985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1382 535 SUPERFAMILY Acetyl-CoA synthetase-like 28 510 - -
Sed04g1382 535 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Sed04g1382 535 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 443 - -
Sed04g1382 535 Gene3D - 444 518 IPR045851 -
Sed04g1382 535 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 514 - GO:0016405(PANTHER)
Sed04g1382 535 Pfam AMP-binding enzyme C-terminal domain 457 509 IPR025110 -
Sed04g1382 535 Gene3D - 14 443 IPR042099 -
Sed04g1382 535 CDD 4CL 25 514 - -
Sed04g1382 535 Pfam AMP-binding enzyme 39 406 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0625 Sed-Chr2:44050761 Sed04g1382 Sed-Chr4:28205449 2.40E-20 dispersed
Sed04g1382 Sed-Chr4:28205449 Sed11g1313 Sed-Chr11:28858233 8.20E-170 dispersed
Sed04g1381 Sed-Chr4:28205449 Sed04g1382 Sed-Chr4:28205449 1.30E-295 tandem
Sed04g1382 Sed-Chr4:28205449 Sed04g1383 Sed-Chr4:28205449 4.3e-312 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1382 K01904 - csv:101204417 844.728