Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1390 ATGGCGTCCCCAAATCCCTCCACCGGCAACCGCTTCTGGCAGCAGCTCCTTTTCGGCCGCTGGTTCTCCATCTTCGCTTCCATCCTCATCATGTCCGTCTCCGGCGCCACCTACATGTTCGGCCTCTACTCCTCCGACATCAAATCCTCCTTAGCCTACGACCAAACCACCCTCAATCTGCTCAGCTTCTTCAAGGACTTAGGCGGCAATGTCGGCCTCATCGGCGGCCTCATCAACGAGGTCGCTCCGCCCTGGGTCGTTCTCGCCATCGGCGCCGTCATGAACCTCTTCGGCTACACCATGATTTGGCTCGCAGTAACCAAACGGATCCCCAACCCCCAAATCTGGCACATGTGTCTCTACATTTGCATCGGCGCTAATTCTCAGACCTTTGCAAATACAGGGGCGCTCGTCACTTCCGTCAAGAACTTCCCGCAGAGCCGCGGCAGCGTTTTGGGCCTTTTGAAAGGCTTCGTCGGGTTGAGCGGCGCCATTTTGACTCAGGTTTACCATGCCTTTTACGGCAGTAACTCCAAATCTCTCATTCTCTTAATCGCTTGGCTTCCGGCCACCGTCTCTGTTTCTTTCCTCTGTTTTGTTCGCAAAATCAACGATCTCCGGCGCCCTAATGAGCTCAAAGTCTTCCTCCATATTCTTTATATTTCCCTTTTCCTTGCTGGGTCTTTAATGGTTTTGATTATCCTGCAAAATCGGTTGCAATTTCGACAGATGGAATACGCCGGAAGTGCCATTGTTGTGGTTGCTCTGCTTTTACTTCCACTCGCCGTCGTTTACAGAGAGGAATTGAGTATTTTCAAGAGTAAAATGGAAAACACAATTTCGCAATTGGAGTTAGCAATAGCATCTCGACAACCGCCGTTATCGGCGGCGCCGCCGACATCTCCGGCCGGGTCCTGCATTGAAAACACATTCAAGCCCCCGAACAGAGGAGAGGATTACACAATTCCACAAGCTATTTTCAGCGTCGATATGATCATTCTGATCACCGCCACGATCTGCGGCGTCGGTGGAACATTGACGGCGATTGACAACTTGGGTCAAATCGGAGAATCGTTGGGATACCCATCTCACAGCACAACCACATTCATCTCTCTCGTTAGTATATGGAATTACCTCGGCCGGGTAGTCGCCGGATTCTCATCGGAATTCCTCTGGAAAAAATACAGAGTCCCACGTCCCCTGATTTTGTTCGTGGTGGTGATTCTATCCTGCGTCGGCCATCTTCTAATCGCATTTGGAGTTCCGAATTCGCTCTATTTCGCTTCGATCATAATAGGATTCTGCTTCGGCGCGCAGTGGCCGTTGATTTTCGCAATCATATCGGAGATTTTTGGGCTGAAGTATTACGCGACTCTGTACAATTTGGGAGGAGTGGCGAGCCCGATTGGGGCGTATGTTCTGAACGTGAGAGTGGCGGGTCGTTTGTACGACGAAGAGGCGAGGCGGCAGATGGCAGCGGCGGGGCGACGGAGGGAAATTGGGGAGGATTTGAGTTGCGTCGGAGTGGAGTGCTACAGAAAGGCGTTTCTTATAATCACGGCGGCGACGGTTTTTGGGGCGTTTGTTTCTCTGGTTTTGGTGGTGAGGACGTGGAAGTTCTATAAGGGAGATATTTACAGGAAGTTCAGGGCGGAAGAAGGTGAAGATGCGGAGGCGAAAATGGCGGCTCCAACGAACAAGGCGGCGGCGAAAATGGAATCTGTTTAG 1728 51.68 MASPNPSTGNRFWQQLLFGRWFSIFASILIMSVSGATYMFGLYSSDIKSSLAYDQTTLNLLSFFKDLGGNVGLIGGLINEVAPPWVVLAIGAVMNLFGYTMIWLAVTKRIPNPQIWHMCLYICIGANSQTFANTGALVTSVKNFPQSRGSVLGLLKGFVGLSGAILTQVYHAFYGSNSKSLILLIAWLPATVSVSFLCFVRKINDLRRPNELKVFLHILYISLFLAGSLMVLIILQNRLQFRQMEYAGSAIVVVALLLLPLAVVYREELSIFKSKMENTISQLELAIASRQPPLSAAPPTSPAGSCIENTFKPPNRGEDYTIPQAIFSVDMIILITATICGVGGTLTAIDNLGQIGESLGYPSHSTTTFISLVSIWNYLGRVVAGFSSEFLWKKYRVPRPLILFVVVILSCVGHLLIAFGVPNSLYFASIIIGFCFGAQWPLIFAIISEIFGLKYYATLYNLGGVASPIGAYVLNVRVAGRLYDEEARRQMAAAGRRREIGEDLSCVGVECYRKAFLIITAATVFGAFVSLVLVVRTWKFYKGDIYRKFRAEEGEDAEAKMAAPTNKAAAKMESV 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28412251 28414142 + Sed0004658.1 Sed04g1390 709993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1390 575 CDD MFS_Mch1p_like 19 527 - -
Sed04g1390 575 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 20 550 - GO:0016020(PANTHER)
Sed04g1390 575 Gene3D MFS general substrate transporter like domains 327 540 IPR036259 -
Sed04g1390 575 Pfam Nodulin-like 20 264 IPR010658 -
Sed04g1390 575 SUPERFAMILY MFS general substrate transporter 23 542 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1390 Sed-Chr4:28412251 Sed06g2020 Sed-Chr6:44310356 2.00E-198 dispersed
Sed02g0614 Sed-Chr2:43929007 Sed04g1390 Sed-Chr4:28412251 8.40E-258 wgd
Sed03g2040 Sed-Chr3:14303667 Sed04g1390 Sed-Chr4:28412251 7.50E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1390 - - - 0.0