Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1400 ATGGACAGAGAGTGGGGGTCGAAGCCGGGAAGTGGCGGAGCCGCCTCCGCACAGAATGAAGCCATCGATCGGAGAGAGCGTCTCCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTCATGCGCAATCATCTTGGAAGTTATGAATGTAAGCTTTGCCTGACTCTGCACAACAATGAGGGGAATTACTTAGCGCACACGCAGGGGAAGCGCCATCAGACTAATTTGGCCAAAAGAGCAGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAGCCTCACAAGAGGAAGGTCTCTGTTCGTAAAACAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACTAAGCAATTTGATCCTGAGACAAAACAGAGATCTTTGCTTTTCCAGATTGAATATCCCGAAATTGAAGACCTAGCAAAGCCAAGACATCGGTTTATGTCCTCATATGAGCAGCGGGTGCAACCATTTGATAAAAGATACCAATATCTTCTCTGTGCAGCTGAACCATACGAGATAATTGCATTCAAGGTTCCAAGCACTGAGATCGACAAATCCACACCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAGTCCAAGCCACAAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAACGGAACAGCACCACCTGGTGCGCCACCACCGAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCTCCAACTCACCAAATGCCAGGATCCCTGCCGCCGCCTCCTTCTGTAATGGCAAATGGGCCTCCTAGGCCAATGCTTCCTGGTGGGGCTCCGCCCATCCCTCCACCGCCTCCGATTGGTAACAATACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGACCTCCCATGCCACCTCCCCCGCAGGGCTTCCCGGGCCAGGTTATCCGTCAGCCACCACCGCCACCACCCAATATGGGATAA 996 52.31 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTAPPGAPPPRPLPPPPQAPPPPPPTHQMPGSLPPPPSVMANGPPRPMLPGGAPPIPPPPPIGNNTMANFTPGTQMNRPPMPPPPQGFPGQVIRQPPPPPPNMG 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28493536 28499442 + Sed0022535.1 Sed04g1400 710003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1400 331 MobiDBLite consensus disorder prediction 1 21 - -
Sed04g1400 331 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Sed04g1400 331 FunFam Splicing factor 3a subunit 2 94 218 - -
Sed04g1400 331 Pfam Zinc-finger of C2H2 type 52 76 IPR013087 -
Sed04g1400 331 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed04g1400 331 MobiDBLite consensus disorder prediction 229 292 - -
Sed04g1400 331 Gene3D - 93 219 - -
Sed04g1400 331 MobiDBLite consensus disorder prediction 303 331 - -
Sed04g1400 331 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 328 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Sed04g1400 331 MobiDBLite consensus disorder prediction 215 331 - -
Sed04g1400 331 SMART CactinC_cactus_3 89 216 - -
Sed04g1400 331 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Sed04g1400 331 Gene3D Classic Zinc Finger 46 89 - -
Sed04g1400 331 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1400 K12826 - csv:101202831 503.442