Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1400 | ATGGACAGAGAGTGGGGGTCGAAGCCGGGAAGTGGCGGAGCCGCCTCCGCACAGAATGAAGCCATCGATCGGAGAGAGCGTCTCCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTCATGCGCAATCATCTTGGAAGTTATGAATGTAAGCTTTGCCTGACTCTGCACAACAATGAGGGGAATTACTTAGCGCACACGCAGGGGAAGCGCCATCAGACTAATTTGGCCAAAAGAGCAGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAGCCTCACAAGAGGAAGGTCTCTGTTCGTAAAACAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACTAAGCAATTTGATCCTGAGACAAAACAGAGATCTTTGCTTTTCCAGATTGAATATCCCGAAATTGAAGACCTAGCAAAGCCAAGACATCGGTTTATGTCCTCATATGAGCAGCGGGTGCAACCATTTGATAAAAGATACCAATATCTTCTCTGTGCAGCTGAACCATACGAGATAATTGCATTCAAGGTTCCAAGCACTGAGATCGACAAATCCACACCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAGTCCAAGCCACAAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAACGGAACAGCACCACCTGGTGCGCCACCACCGAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCTCCAACTCACCAAATGCCAGGATCCCTGCCGCCGCCTCCTTCTGTAATGGCAAATGGGCCTCCTAGGCCAATGCTTCCTGGTGGGGCTCCGCCCATCCCTCCACCGCCTCCGATTGGTAACAATACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGACCTCCCATGCCACCTCCCCCGCAGGGCTTCCCGGGCCAGGTTATCCGTCAGCCACCACCGCCACCACCCAATATGGGATAA | 996 | 52.31 | MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTAPPGAPPPRPLPPPPQAPPPPPPTHQMPGSLPPPPSVMANGPPRPMLPGGAPPIPPPPPIGNNTMANFTPGTQMNRPPMPPPPQGFPGQVIRQPPPPPPNMG | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28493536 | 28499442 | + | Sed0022535.1 | Sed04g1400 | 710003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1400 | 331 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed04g1400 | 331 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 83 | IPR036236 | - | |
Sed04g1400 | 331 | FunFam | Splicing factor 3a subunit 2 | 94 | 218 | - | - | |
Sed04g1400 | 331 | Pfam | Zinc-finger of C2H2 type | 52 | 76 | IPR013087 | - | |
Sed04g1400 | 331 | SMART | ZnF_U1_5 | 49 | 83 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Sed04g1400 | 331 | MobiDBLite | consensus disorder prediction | 229 | 292 | - | - | |
Sed04g1400 | 331 | Gene3D | - | 93 | 219 | - | - | |
Sed04g1400 | 331 | MobiDBLite | consensus disorder prediction | 303 | 331 | - | - | |
Sed04g1400 | 331 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 328 | IPR052092 | GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER) | |
Sed04g1400 | 331 | MobiDBLite | consensus disorder prediction | 215 | 331 | - | - | |
Sed04g1400 | 331 | SMART | CactinC_cactus_3 | 89 | 216 | - | - | |
Sed04g1400 | 331 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 110 | 204 | IPR031781 | - | |
Sed04g1400 | 331 | Gene3D | Classic Zinc Finger | 46 | 89 | - | - | |
Sed04g1400 | 331 | ProSiteProfiles | Zinc finger matrin-type profile. | 52 | 82 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1400 | K12826 | - | csv:101202831 | 503.442 |