Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1413 ATGATCATCGTCTGCGCGGTACAATTCAAGATGGTGGGATTTTGTGTACATGCTCGTCCTGCAATGGAAGCAGAGTCTGTAATCCCTCCTTCGCAATTTGAGATCCACGCTTGTAAACAATACAAACGAGCGGCACAGTATATATGTTTTGAGAACGGGAAGAGCCTACTCGACTTGTTGAAAGCATGCAAGGGAAGTAGTCAGACAGTCGAGGCCACTATTCAAAGTCTGATTAGCTCTTCTCCAGAAGAAAAAGATTTTACGTGTAGAGAGTGTAAAGGATGCTTTCCTTCATCCATTGGACAAGTGGGACCTTTATGCTCTTCCTGCGAGGAATCAAAGCGATCTCAGTGTACGCCATCATTGCCGACTCCCCCCACTTCTGCAATTGATAAGACACCGAGGTCAACAGAACCTACCACATCAAAATCATCTGGAAGTGTTCCAGTACATATTCCTTCACGAAATAAACGCAAATGGGTGATAAAAGCAAAGTCAGAATCGGCCGAATATATTTCTATCTCAAGATCCTCCAAAAGCGCACCCGTGCATATTCCTACAAAGAATAAGACTGCATTGAAGATGAGAAAGAAGTTATTGAAACCAGCCTCAGTGTCAAAAGCCTCCCAAAGTGCTTCAAAGTGTAGTTCTTCATTAGCTAAAAATCAGTGGAAAATAACAAAGAAAGACCAGAGGTTGCATAAGTTGGTTTTTGAGGATGACGGATTACCTGATGGAACTGAAGTAGCATATTTTGCCAGGGGACAGAAATTGCTCCAGGGTTATAAGAAGGGGTCTGGAATTCTATGTTGCTGCTGCAATTGTGTGGTTAGTCCTTCACAATTTGAAGTTCATGCGGGTTGGTCTTCTCGAAAGAAACCCTATGAATATATTTACACATCCAATGGGGTTTCTCTGCATGAATTAGCAATCTCTCTCTCGAAGGGGCGCAAGTATTCTGCTAAGGATAATGATGACTTATGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTTCACAAAGAATGTGCATCATTATCAAGTATTCCCCGTGGTGATTGGTATTGTAAATTTTGCCAGAATTTGTTCCAAAGAGAGAAGTTTGTTGAGCATAATGCCAATGCTGTTGCAGCCGGAAGGGTATATGGAGTTGACCCTATTGACCAGATTACTAAAAGATGCATTCGAATGGTCAGGAACTTAGAAACAGATCTTAGTGGATGTGTGTTATGCCGTGGCTCTGGTTTCAGCAAATCAGGTTTTGGTCCCCGCACGATTATACTTTGTGATCAGTGCGAGAAGGAATTTCACGTGGGCTGTTTGAAAAACCACAAAATGGCATTTCTTAAGGAATTACCAAGAGGGAAGTGGTTCTGTAGCACAGATTGTATGAGGATACATTCTGCTCTAAAGAAGTTGCTAATTCGTGGGCCAGAGAAGCTTCCAGATTCACTTTTGGATGCTGTCAATAGAAAGCTTGGAGAAAATGGTTTGGACATTAAGGCTGATGTCGATGTCAGTTGGAGGATTGTCAGTGGCAAAATCGCTTCACCTGAAACTCGGTTGTTACTGTCACAGGCCGTTGCTATCTTCCACGATCGCTTTGATCCTATAGTTGATATAACAAGTGGACGCGATCTTATTCCAGCTATGGTTTATGGAAGGGATGTTGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAGTTGTCAACTCATTTGTTGTATCTGCTGCAATGCTTCGTGTTTTTGGGCAAGATATTGCAGAGCTGCCGTTGGTTGCAACAAGTAATGGTAACCATGGCAAGGGCTACTTCCAAACATTGTTTTCGTGCATCGAGAGGCTTCTAGCTTTCTTGAAAGTCAAGTGCCTTGTTCTCCCAGCTGCTGAAGAAGCTGAATCCATCTGGACCGAGAAATTCGGTTTTGAGAGAATAAAACCAGACGAGCTCAGCTGCTATAGAAGAAATTGCTGCCAGATGGTAATATTCAAAGGGACATCCATGCTTCAGAAAACGGTTCCATCATCTCCGGTCGTAGGCGATCCATTGTGA 2082 42.94 MIIVCAVQFKMVGFCVHARPAMEAESVIPPSQFEIHACKQYKRAAQYICFENGKSLLDLLKACKGSSQTVEATIQSLISSSPEEKDFTCRECKGCFPSSIGQVGPLCSSCEESKRSQCTPSLPTPPTSAIDKTPRSTEPTTSKSSGSVPVHIPSRNKRKWVIKAKSESAEYISISRSSKSAPVHIPTKNKTALKMRKKLLKPASVSKASQSASKCSSSLAKNQWKITKKDQRLHKLVFEDDGLPDGTEVAYFARGQKLLQGYKKGSGILCCCCNCVVSPSQFEVHAGWSSRKKPYEYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNLFQREKFVEHNANAVAAGRVYGVDPIDQITKRCIRMVRNLETDLSGCVLCRGSGFSKSGFGPRTIILCDQCEKEFHVGCLKNHKMAFLKELPRGKWFCSTDCMRIHSALKKLLIRGPEKLPDSLLDAVNRKLGENGLDIKADVDVSWRIVSGKIASPETRLLLSQAVAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCAILVVNSFVVSAAMLRVFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFERIKPDELSCYRRNCCQMVIFKGTSMLQKTVPSSPVVGDPL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28630787 28655474 - Sed0019421.2 Sed04g1413 710016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1413 693 PANTHER AUTOIMMUNE REGULATOR 26 684 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed04g1413 693 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 565 659 IPR016181 -
Sed04g1413 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 474 IPR013083 -
Sed04g1413 693 SUPERFAMILY FYVE/PHD zinc finger 412 470 IPR011011 -
Sed04g1413 693 Pfam Tify domain binding domain 26 63 IPR032308 -
Sed04g1413 693 Pfam Tify domain binding domain 261 310 IPR032308 -
Sed04g1413 693 MobiDBLite consensus disorder prediction 115 152 - -
Sed04g1413 693 SMART PHD_3 415 471 IPR001965 -
Sed04g1413 693 SMART PHD_3 327 368 IPR001965 -
Sed04g1413 693 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 314 391 - -
Sed04g1413 693 ProSitePatterns Zinc finger PHD-type signature. 328 367 IPR019786 -
Sed04g1413 693 SUPERFAMILY FYVE/PHD zinc finger 316 372 IPR011011 -
Sed04g1413 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 392 IPR013083 -
Sed04g1413 693 ProSiteProfiles Zinc finger PHD-type profile. 325 370 IPR019787 -
Sed04g1413 693 MobiDBLite consensus disorder prediction 115 151 - -
Sed04g1413 693 Pfam PHD-finger 416 468 IPR019787 -
Sed04g1413 693 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 324 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1413 Sed-Chr4:28630787 Sed05g1258 Sed-Chr5:22023656 3.20E-198 dispersed
Sed04g1412 Sed-Chr4:28630787 Sed04g1413 Sed-Chr4:28630787 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38136 PF16135 TDBD 1.70E-17 No_clan Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1413 - - - 0.0