Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1413 ATGATCATCGTCTGCGCGGTACAATTCAAGATGGTGGGATTTTGTGTACATGCTCGTCCTGCAATGGAAGCAGAGTCTGTAATCCCTCCTTCGCAATTTGAGATCCACGCTTGTAAACAATACAAACGAGCGGCACAGTATATATGTTTTGAGAACGGGAAGAGCCTACTCGACTTGTTGAAAGCATGCAAGGGAAGTAGTCAGACAGTCGAGGCCACTATTCAAAGTCTGATTAGCTCTTCTCCAGAAGAAAAAGATTTTACGTGTAGAGAGTGTAAAGGATGCTTTCCTTCATCCATTGGACAAGTGGGACCTTTATGCTCTTCCTGCGAGGAATCAAAGCGATCTCAGTGTACGCCATCATTGCCGACTCCCCCCACTTCTGCAATTGATAAGACACCGAGGTCAACAGAACCTACCACATCAAAATCATCTGGAAGTGTTCCAGTACATATTCCTTCACGAAATAAACGCAAATGGGTGATAAAAGCAAAGTCAGAATCGGCCGAATATATTTCTATCTCAAGATCCTCCAAAAGCGCACCCGTGCATATTCCTACAAAGAATAAGACTGCATTGAAGATGAGAAAGAAGTTATTGAAACCAGCCTCAGTGTCAAAAGCCTCCCAAAGTGCTTCAAAGTGTAGTTCTTCATTAGCTAAAAATCAGTGGAAAATAACAAAGAAAGACCAGAGGTTGCATAAGTTGGTTTTTGAGGATGACGGATTACCTGATGGAACTGAAGTAGCATATTTTGCCAGGGGACAGAAATTGCTCCAGGGTTATAAGAAGGGGTCTGGAATTCTATGTTGCTGCTGCAATTGTGTGGTTAGTCCTTCACAATTTGAAGTTCATGCGGGTTGGTCTTCTCGAAAGAAACCCTATGAATATATTTACACATCCAATGGGGTTTCTCTGCATGAATTAGCAATCTCTCTCTCGAAGGGGCGCAAGTATTCTGCTAAGGATAATGATGACTTATGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTTCACAAAGAATGTGCATCATTATCAAGTATTCCCCGTGGTGATTGGTATTGTAAATTTTGCCAGAATTTGTTCCAAAGAGAGAAGTTTGTTGAGCATAATGCCAATGCTGTTGCAGCCGGAAGGGTATATGGAGTTGACCCTATTGACCAGATTACTAAAAGATGCATTCGAATGGTCAGGAACTTAGAAACAGATCTTAGTGGATGTGTGTTATGCCGTGGCTCTGGTTTCAGCAAATCAGGTTTTGGTCCCCGCACGATTATACTTTGTGATCAGTGCGAGAAGGAATTTCACGTGGGCTGTTTGAAAAACCACAAAATGGCATTTCTTAAGGAATTACCAAGAGGGAAGTGGTTCTGTAGCACAGATTGTATGAGGATACATTCTGCTCTAAAGAAGTTGCTAATTCGTGGGCCAGAGAAGCTTCCAGATTCACTTTTGGATGCTGTCAATAGAAAGCTTGGAGAAAATGGTTTGGACATTAAGGCTGATGTCGATGTCAGTTGGAGGATTGTCAGTGGCAAAATCGCTTCACCTGAAACTCGGTTGTTACTGTCACAGGCCGTTGCTATCTTCCACGATCGCTTTGATCCTATAGTTGATATAACAAGTGGACGCGATCTTATTCCAGCTATGGTTTATGGAAGGGATGTTGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAGTTGTCAACTCATTTGTTGTATCTGCTGCAATGCTTCGTGTTTTTGGGCAAGATATTGCAGAGCTGCCGTTGGTTGCAACAAGTAATGGTAACCATGGCAAGGGCTACTTCCAAACATTGTTTTCGTGCATCGAGAGGCTTCTAGCTTTCTTGAAAGTCAAGTGCCTTGTTCTCCCAGCTGCTGAAGAAGCTGAATCCATCTGGACCGAGAAATTCGGTTTTGAGAGAATAAAACCAGACGAGCTCAGCTGCTATAGAAGAAATTGCTGCCAGATGGTAATATTCAAAGGGACATCCATGCTTCAGAAAACGGTTCCATCATCTCCGGTCGTAGGCGATCCATTGTGA 2082 42.94 MIIVCAVQFKMVGFCVHARPAMEAESVIPPSQFEIHACKQYKRAAQYICFENGKSLLDLLKACKGSSQTVEATIQSLISSSPEEKDFTCRECKGCFPSSIGQVGPLCSSCEESKRSQCTPSLPTPPTSAIDKTPRSTEPTTSKSSGSVPVHIPSRNKRKWVIKAKSESAEYISISRSSKSAPVHIPTKNKTALKMRKKLLKPASVSKASQSASKCSSSLAKNQWKITKKDQRLHKLVFEDDGLPDGTEVAYFARGQKLLQGYKKGSGILCCCCNCVVSPSQFEVHAGWSSRKKPYEYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNLFQREKFVEHNANAVAAGRVYGVDPIDQITKRCIRMVRNLETDLSGCVLCRGSGFSKSGFGPRTIILCDQCEKEFHVGCLKNHKMAFLKELPRGKWFCSTDCMRIHSALKKLLIRGPEKLPDSLLDAVNRKLGENGLDIKADVDVSWRIVSGKIASPETRLLLSQAVAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCAILVVNSFVVSAAMLRVFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFERIKPDELSCYRRNCCQMVIFKGTSMLQKTVPSSPVVGDPL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28630787 28655474 - Sed0019421.2 Sed04g1413 710016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1413 693 PANTHER AUTOIMMUNE REGULATOR 26 684 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed04g1413 693 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 565 659 IPR016181 -
Sed04g1413 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 474 IPR013083 -
Sed04g1413 693 SUPERFAMILY FYVE/PHD zinc finger 412 470 IPR011011 -
Sed04g1413 693 Pfam Tify domain binding domain 26 63 IPR032308 -
Sed04g1413 693 Pfam Tify domain binding domain 261 310 IPR032308 -
Sed04g1413 693 MobiDBLite consensus disorder prediction 115 152 - -
Sed04g1413 693 SMART PHD_3 415 471 IPR001965 -
Sed04g1413 693 SMART PHD_3 327 368 IPR001965 -
Sed04g1413 693 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 314 391 - -
Sed04g1413 693 ProSitePatterns Zinc finger PHD-type signature. 328 367 IPR019786 -
Sed04g1413 693 SUPERFAMILY FYVE/PHD zinc finger 316 372 IPR011011 -
Sed04g1413 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 392 IPR013083 -
Sed04g1413 693 ProSiteProfiles Zinc finger PHD-type profile. 325 370 IPR019787 -
Sed04g1413 693 MobiDBLite consensus disorder prediction 115 151 - -
Sed04g1413 693 Pfam PHD-finger 416 468 IPR019787 -
Sed04g1413 693 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 324 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1413 Sed-Chr4:28630787 Sed05g1258 Sed-Chr5:22023656 3.20E-198 dispersed
Sed04g1412 Sed-Chr4:28630787 Sed04g1413 Sed-Chr4:28630787 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02472 . . . . . . . . Sed04g1413 . . . . . . . . Bhi11g02031 Tan08g1823 Cmetu04g2275 . . . . . . . . . . . Lsi03g01970 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1413 . 26 689 PHD Transcription Factor Family AT2G36720 53.2 2.9e-200 696.8
Sed02g0694 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed02g0695 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed04g1286 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1287 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1288 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1413 . 228 685 PHD Transcription Factor Family AT3G53680 52.6 2.5e-136 484.2
Sed05g2940 . 313 451 PHD Transcription Factor Family AT3G53680 51.1 9.9e-37 153.3
Sed04g2818 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed04g2819 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed07g2464 . 435 563 PHD Transcription Factor Family AT3G53680 53.5 4.9e-36 151.0
Sed05g2941 . 313 448 PHD Transcription Factor Family AT3G53680 50.7 4.9e-36 151.0
Sed07g2462 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2463 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2465 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2466 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2467 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed12g1554 . 251 395 PHD Transcription Factor Family AT5G12400 52.3 1.2e-38 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38136 PF16135 TDBD 1.70E-17 No_clan Sed TR