Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1416 ATGGAGAAAGACACCGCCGCCGCCGGCGAGAGGAACAACCGAGCGAGACTAGCCATTCTAGAGCTCGCGAACATGATCAGCGTTCCGATGTCCCTAAACGCCGTCGTCCGCCTCAACGTCGCCGACGCCATCTGGCAAGGAGGTTCCAACATTCCGCTCTCCACCGCGGAGATCCTGGCACGCGTGGTTCCGTCCGGCGGCGACGCAGACAATCTCGGCCGGATCCTCCGTATGCTCACCAGCTACGGCGTTTTTGAAGAGCATCTCAGCCCTGACTCGCCGGACCTGCGGTACTCCCTCACCGACGTCGGCAGAACTCTGGTCACCGATTCCGACGGCCTGTCCTACGCGCCGTACGTGCTTCAGCATCATCAGGACGCGCTGATGAGAGCGTGGCCGAGAGTGCACGAGGCGGCGATCGACGCCACGACGGAGCCGTTCGTCAGTGCGAACGGGGAGGCGGCGTACAGCTACTACGGGAAGAAGGCGGAGATGAATCTGTTGATGCAGAAAGCGATGGCCGGCGTATCGGTGCCGTTCATGAAGGCTCTATTGGACGGCTACAATGGCTTCCGAGGAGTGGAGAAATTGGTCGACGTCGGCGGTAGCGCCGGTGATTGCTTGAAGATGATTTTACAGAAATACCCTCACATTAAGGAAGGCATTAATTTTGACCTGCCCGAGGTGGTGGCTAGGGCTCCCACCATCCCCGGTGTGCATCACGTTGGAGGTGACATGTTCAAGTCTATCCCCACCGGCGACGCTATTTTCATGAAGTGGGTTCTTTCAACATGGACAGACGATGAGTGCAAGATTATATTAGAGAACTGCTGCAAGTCTCTCCCGGTGGGAGGGAAATTGATTGCCTGCGAGCCGACGTTGCCGGAGAAGACGGATGACAGTCACCGGACACGTGCCCTTTTGGCGAGCGACGTATTCATCATGACCATTTACAGTGCCAAAAGCAAGCAGAGGACTGAGGAGCAGTTTCGGAAGCTCGGCCTCGCTGCCGGCTTCTCTGCCCTTCGCCCATTCCATATCGATTACTTCTATTGTTTGTTGGAGTTCCAGAAGTGA 1077 57.2 MEKDTAAAGERNNRARLAILELANMISVPMSLNAVVRLNVADAIWQGGSNIPLSTAEILARVVPSGGDADNLGRILRMLTSYGVFEEHLSPDSPDLRYSLTDVGRTLVTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDATTEPFVSANGEAAYSYYGKKAEMNLLMQKAMAGVSVPFMKALLDGYNGFRGVEKLVDVGGSAGDCLKMILQKYPHIKEGINFDLPEVVARAPTIPGVHHVGGDMFKSIPTGDAIFMKWVLSTWTDDECKIILENCCKSLPVGGKLIACEPTLPEKTDDSHRTRALLASDVFIMTIYSAKSKQRTEEQFRKLGLAAGFSALRPFHIDYFYCLLEFQK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28671762 28680023 - Sed0014983.1 Sed04g1416 710019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1416 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168(InterPro)
Sed04g1416 358 Gene3D - 3 112 IPR036388 -
Sed04g1416 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168(InterPro)
Sed04g1416 358 Gene3D Vaccinia Virus protein VP39 113 358 IPR029063 -
Sed04g1416 358 Pfam O-methyltransferase domain 138 340 IPR001077 GO:0008171(InterPro)
Sed04g1416 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 356 IPR029063 -
Sed04g1416 358 SUPERFAMILY Winged helix DNA-binding domain 13 110 IPR036390 -
Sed04g1416 358 PANTHER O-METHYLTRANSFERASE 24 340 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1416 Sed-Chr4:28671762 Sed13g0025 Sed-Chr13:160330 6.50E-62 dispersed
Sed04g1416 Sed-Chr4:28671762 Sed01g0671 Sed-Chr1:4915564 7.20E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1416 - - - 0.0