Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1426 ATGCGGGCCTTGTTTTCCTTCATCTTCGTCTTCGCATCCCTCTTTCTGCCGGCGACGGTGGTCTACTCCGGCTTCCCCGTCGGGCTTCTCCACCTACACAGGGCTTTTCCTTCCTCTCGCTCCGCCGGACTCGAAGCCCTAAGAGCTCGGGATCGCCTCCGCCATGCCAGAATCTTGCAAGGCGTCGTCGACTTCTCGGTCGAAGGTTCTTCCGATCCATTGCTCGTCGGGCTTTACTTTACCAAAGTTAAATTAGGCACTCCTCCGAGGGAATTTACGGTGCAGATCGACACGGGAAGCGATATATTGTGGGTCAACTGCAATTCCTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAGTTCAACTAAATTTTTTTGATGCTTCCAGCTCATCGAGTTCTTCACTGGTTTCCTGCGCTGACCCAATATGCAATTCTCCATTCCAGACAACTGCAACTCAGTGTTTACCTCAGACTAATCAATGTAGCTACACCTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTCGACATGGTTATGGGGCATTCTATGATTGCTAACTCTTCATCTGCAGTTGTATTTGGTTGTAGCACCTATCAGTCAGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCTGGGGGATTGTCTGTCATATCACAGTTGTCAGCTCGAGGGATCACCCCTAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGTGGTGGAATATTGGTTCTTGGTGAGGTTTTGGAGCCCAGCATCGTGTATAGCCCACTTGTGCCCTCACAGCCTCACTATAACTTATATCTGCAAAGCATTGCTGTCAATGGTCAGATGCTGCCGATTGATCCATCTGTGTTTGCAACATCAACCAATCGAGGAACTATTGTAGACTCTGGGACGACATTGGCTTATCTTGTGGAAGAAGCATATACTCCATTTGTCAACGCTATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCGACCAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAATTTTGCGGGCAGTGCATCTATGGTGTTAAAACCCGAAGAATATCTTATGCAGCTTGGCTTTTATGATGCTGCTGCATTGTGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGATTAACAATTTTAGGAGATCTTGTTATGAAAGATAAGATTTTCGTATACGATTTGGCTCGCCAGCAAATTGGGTGGGCTAACTACGATTGTTCTCAAGCTGTAAATGTATCTGTCACGTCTGGGAAGAACGAGTTCGTCAATGCAGGACAGCTGAATGTGAGTGGCTCAACCCGAGATAAGCTCCTTCAATCACTAACTATGCAAGGATTAGTTCTGTTATTAAGTTTGATTTTGTTCTTCCACTCCCAGTTTCTGTAA 1479 45.44 MRALFSFIFVFASLFLPATVVYSGFPVGLLHLHRAFPSSRSAGLEALRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPREFTVQIDTGSDILWVNCNSCNGCPRSSGLGVQLNFFDASSSSSSSLVSCADPICNSPFQTTATQCLPQTNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSSAVVFGCSTYQSGDLTKSDHAIDGIFGFGPGGLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPSIVYSPLVPSQPHYNLYLQSIAVNGQMLPIDPSVFATSTNRGTIVDSGTTLAYLVEEAYTPFVNAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMQLGFYDAAALWCIGFQKVQEGLTILGDLVMKDKIFVYDLARQQIGWANYDCSQAVNVSVTSGKNEFVNAGQLNVSGSTRDKLLQSLTMQGLVLLLSLILFFHSQFL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28830698 28834985 + Sed0020694.1 Sed04g1426 710029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1426 492 FunFam Aspartic proteinase-like protein 2 266 444 - -
Sed04g1426 492 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Sed04g1426 492 FunFam Aspartic proteinase-like protein 2 62 265 - -
Sed04g1426 492 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Sed04g1426 492 CDD pepsin_A_like_plant 79 437 IPR034161 -
Sed04g1426 492 Gene3D Acid Proteases 63 265 IPR021109 -
Sed04g1426 492 Gene3D Acid Proteases 266 444 IPR021109 -
Sed04g1426 492 PANTHER ASPARTYL PROTEASES 25 437 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed04g1426 492 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed04g1426 492 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed04g1426 492 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed04g1426 492 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Sed04g1426 492 SUPERFAMILY Acid proteases 75 441 IPR021109 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2058 Sed-Chr3:14702146 Sed04g1426 Sed-Chr4:28830698 9.20E-137 dispersed
Sed03g2059 Sed-Chr3:14702146 Sed04g1426 Sed-Chr4:28830698 9.20E-137 dispersed
Sed04g1426 Sed-Chr4:28830698 Sed11g1233 Sed-Chr11:28131729 2.90E-89 dispersed
Sed05g1251 Sed-Chr5:21674944 Sed04g1426 Sed-Chr4:28830698 4.60E-159 transposed
Sed05g3438 Sed-Chr5:43299994 Sed04g1426 Sed-Chr4:28830698 3.30E-43 transposed
Sed03g2053 Sed-Chr3:14702146 Sed04g1426 Sed-Chr4:28830698 3.10E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1426 - - - 0.0