Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g1427 | ATGGCGGTTCCTCAGACGGCGGTTTCTCAGACGGAGGTTCCTGTTGCGACGGCTTCCCTCTACGTCGGCGATCTTCACCCTGATGTCACTGATGGTCAGCTCTTTGAGGCTTTCAATGGCTTCAAGAGCCTCGCCTCGGTTCGTATCTGCAGGGATTCATCCACTGGACGATCTCTCGCTTATGGCTACGTCAATTTCATTTCTCCTCAAGACGCAACCGATGCCATAGAGGTAATGAACCACAGTGTGCTGAATGGAAAAGCTATTCGAGTCATGTGGTCACGTCGTGATGCTGATGCAAGAAAAAGTGGAGTCGGAAACCTTTTTGTTAAGAACTTGGGCGATTCAATCAATAGTTTAGGGCTTCAAGAGATGTTTAAAAAATTTGGAAATGTTATGTCGTGCAAAGTTGTCACATCCGATGATGGGAAAAGCAAAGGATATGGATTTGTACAGTTTGAATCTGAGGATTCTGCAAATGCTGCCATAGAATCGCTAAATGGTTTTACTATTGGGGATAAGCAGATATATGTCGGAAAATTTGTTCGGAAAAGTGATCGAATTTTGGGTCATCGTGATGTTAAATTTACAAATCTGTACTTGAAAAATCTTGACCCAGAGGTTGGGGAAGAACTTTTGCAAGAAAAATTCTCTGAGTTTGGAAAAATTTCCAGCTTGGTTATTTCAAGGGATGAGAATGGAATGTCTAGAGGTTTTGGTTTTATAAACTTTGAAAACTATGATGATGCCAAACGGTCATTGGAAGCACTTAACGGATCAGAACTTGGTTCGAAGCCTATATACATTGCAAGGGCACAAAAGAAGTCCGAACGAGAGCAAATATTGCGTCGACATTATGAAGAGAAATGCAAGGAACAAATGATAAAATGCCAGGGCTCAAATGTGTATGTGAAGAACATTGATGATGCTATCACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACTATTACTTCATCAAAACTTATGCAAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTTTGCTTCTCTAATCCTGACGAAGCTAAAAGAGCTGTGAACACTTTGCAAGGAACTATGTTTCACGGGAAGCCACTCTATTTGGCTATCGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCACAAAGGTTGGCAGGGATACCTGGACCGTCAACTTCGCTTTTTCCTGGATACTCACCTTATTATTACACAGCACCAGGTGTTGTTCCACAAGTCTCCTCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCAGGGTGGAGAGCCAATACTTTTGCATCTCCTGTAAGACCTGGCTTTCAACCTTCACCTCTACCTGTTATGCCGAATGCTAGGCTACCCAGGCAAAACCGAGGCAAAATGAATGGACAAATGCTTTCTCATCAAAATGGTGTCCAATCTGTTCCTTATATGCAAAATTCACAAGATAGCAATCAGTCAGTAGTTACCGCAAAATCATCTGGCAATCAGCAGTGGACTGGACAGGTCAAGTACGTCCCAAATGCTCGATCATGCGAAACAAACAGACCTGGAGCCTCACCTGCTACTGCTGCATTTAATTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCTTGCTTGCTGCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAACATCTCTACCCACTAGTCCAGAAACATAAGCCGGATCTTGCTGCGAAAATTACCGGGATGCTTCTGGAGATGGACAACTCGGAATTGCTGCTCCTGTTAGAGTCTCCCGAAGCTCTGGCGGCCAAGGCAGAAGAAGCAGTGCAGGTGCTTAAGGTCTCTAAGACTAAGCTGCCCAACCAAGACACACTCGGTTTCTTATCAGCTGAGCTAGCGGTCAACTGA | 1926 | 44.03 | MAVPQTAVSQTEVPVATASLYVGDLHPDVTDGQLFEAFNGFKSLASVRICRDSSTGRSLAYGYVNFISPQDATDAIEVMNHSVLNGKAIRVMWSRRDADARKSGVGNLFVKNLGDSINSLGLQEMFKKFGNVMSCKVVTSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRILGHRDVKFTNLYLKNLDPEVGEELLQEKFSEFGKISSLVISRDENGMSRGFGFINFENYDDAKRSLEALNGSELGSKPIYIARAQKKSEREQILRRHYEEKCKEQMIKCQGSNVYVKNIDDAITDEELRERFSQFGTITSSKLMQDDKGINKGFGFVCFSNPDEAKRAVNTLQGTMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTSLFPGYSPYYYTAPGVVPQVSSRPGLMFQPLGMRPGWRANTFASPVRPGFQPSPLPVMPNARLPRQNRGKMNGQMLSHQNGVQSVPYMQNSQDSNQSVVTAKSSGNQQWTGQVKYVPNARSCETNRPGASPATAAFNSVGDVSQGSQILSSLLAASPPDQQKQILGEHLYPLVQKHKPDLAAKITGMLLEMDNSELLLLLESPEALAAKAEEAVQVLKVSKTKLPNQDTLGFLSAELAVN | 641 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 28836323 | 28840690 | + | Sed0021738.1 | Sed04g1427 | 710030 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g1427 | 641 | Pfam | Poly-adenylate binding protein, unique domain | 554 | 618 | IPR002004 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 546 | 623 | IPR002004 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | FunFam | Polyadenylate-binding protein | 103 | 187 | - | - | |
| Sed04g1427 | 641 | FunFam | Polyadenylate-binding protein | 188 | 282 | - | - | |
| Sed04g1427 | 641 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 18 | 619 | IPR006515 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | PANTHER | RNA BINDING PROTEIN | 12 | 198 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Sed04g1427 | 641 | Gene3D | - | 4 | 106 | IPR012677 | - | |
| Sed04g1427 | 641 | FunFam | Polyadenylate-binding protein | 283 | 391 | - | - | |
| Sed04g1427 | 641 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | CDD | RRM2_I_PABPs | 104 | 180 | IPR045305 | - | |
| Sed04g1427 | 641 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | Gene3D | - | 190 | 286 | IPR012677 | - | |
| Sed04g1427 | 641 | Gene3D | - | 287 | 387 | IPR012677 | - | |
| Sed04g1427 | 641 | Gene3D | - | 543 | 623 | - | - | |
| Sed04g1427 | 641 | CDD | RRM4_I_PABPs | 299 | 377 | - | - | |
| Sed04g1427 | 641 | SUPERFAMILY | PABC (PABP) domain | 550 | 628 | IPR036053 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm1_1 | 301 | 373 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm1_1 | 198 | 270 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm2_1 | 107 | 179 | IPR003954 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm2_1 | 301 | 373 | IPR003954 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm2_1 | 198 | 270 | IPR003954 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | SMART | rrm2_1 | 19 | 92 | IPR003954 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | FunFam | Polyadenylate-binding protein | 10 | 102 | - | - | |
| Sed04g1427 | 641 | Pfam | RNA recognition motif | 302 | 370 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | Pfam | RNA recognition motif | 108 | 176 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | Pfam | RNA recognition motif | 20 | 90 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | Pfam | RNA recognition motif | 199 | 267 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 197 | 274 | IPR000504 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | Gene3D | - | 107 | 189 | IPR012677 | - | |
| Sed04g1427 | 641 | SUPERFAMILY | RNA-binding domain, RBD | 298 | 390 | IPR035979 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | Coils | Coil | 269 | 289 | - | - | |
| Sed04g1427 | 641 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 185 | IPR035979 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | SMART | poly_2 | 558 | 621 | IPR002004 | GO:0003723(InterPro) | |
| Sed04g1427 | 641 | FunFam | Polyadenylate-binding protein | 544 | 630 | - | - | |
| Sed04g1427 | 641 | SUPERFAMILY | RNA-binding domain, RBD | 191 | 284 | IPR035979 | GO:0003676(InterPro) | |
| Sed04g1427 | 641 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 300 | 377 | IPR000504 | GO:0003723(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g1427 | Sed-Chr4:28836323 | Sed13g0482 | Sed-Chr13:3303081 | 7.30E-133 | dispersed | |
| Sed04g1427 | Sed-Chr4:28836323 | Sed10g2019 | Sed-Chr10:36768905 | 2.10E-135 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g1427 | K13126 | - | csv:101203793 | 1067.37 |